RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 ARFGAP2Q8N6H7 521 aa7.57□□□□□ -1.2
VPS13B-205ENST00000493587 KIFAP3Q92845 792 aa7.57□□□□□ -1.2
VPS13B-205ENST00000493587 API5Q9BZZ5 524 aaKnown RBP7.57□□□□□ -1.2
VPS13B-205ENST00000493587 MRGBPQ9NV56 204 aa7.57□□□□□ -1.2
VPS13B-205ENST00000493587 INTUQ9ULD6 942 aa7.57□□□□□ -1.2
VPS13B-205ENST00000493587 AOX1Q06278 1338 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 ENC1O14682 589 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 KRT14P02533 472 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 MRPS25P82663 173 aaKnown RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 SPRED3Q2MJR0 410 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 MYOCDQ8IZQ8 938 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 ABHD8Q96I13 439 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 MEIS3Q99687 375 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 USP44Q9H0E7 712 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 CARD9Q9H257 536 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 ABCF3Q9NUQ8 709 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 PANK4Q9NVE7 773 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 GUCA1BQ9UMX6 200 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 PRELID1Q9Y255 219 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 TMA7Q9Y2S6 64 aaKnown RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 CTDP1Q9Y5B0 961 aaPredicted RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 SMIM23A6NLE4 172 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 EIF3FO00303 357 aaPredicted RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 CCND1P24385 295 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 NFKBIAP25963 317 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 HOXD11P31277 338 aaPredicted RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 TUFMP49411 452 aaKnown RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 NLRP5P59047 1200 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 TRIM29Q14134 588 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 BEND3Q5T5X7 828 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 THOC7Q6I9Y2 204 aaKnown RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 ERICH1Q86X53 443 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 MAP7D3Q8IWC1 876 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 RPAP2Q8IXW5 612 aaPredicted RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 SPICE1Q8N0Z3 855 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 SSH3Q8TE77 659 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 SREK1Q8WXA9 508 aaKnown RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 PRCCQ92733 491 aaPredicted RBP7.56□□□□□ -1.2
VPS13B-205ENST00000493587 CLIP3Q96DZ5 547 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 SEC16BQ96JE7 1060 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 TCEANC2Q96MN5 208 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 SIKE1Q9BRV8 207 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 OSBPL10Q9BXB5 764 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 ARHGEF10LQ9HCE6 1279 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 FAM114A2Q9NRY5 505 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 TMCO1Q9UM00 188 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 SYNPO2Q9UMS6 1093 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 SNX14Q9Y5W7 946 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 LRRC37AA6NMS7 1700 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 LAMB1P07942 1786 aa7.56□□□□□ -1.2
VPS13B-205ENST00000493587 GMNCA6NCL1 334 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 USO1O60763 962 aaKnown RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 DNAJC8O75937 253 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 FLT3P36888 993 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 SKOR1P84550 965 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 CKAP4Q07065 602 aaKnown RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 ADAM9Q13443 819 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 NBPF14Q5TI25 921 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 LMBRD2Q68DH5 695 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 ARHGAP27Q6ZUM4 889 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 PALB2Q86YC2 1186 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 VSTM4Q8IW00 320 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 HAUS1Q96CS2 278 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 RRP36Q96EU6 259 aaKnown RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 LTV1Q96GA3 475 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 TSC22D4Q9Y3Q8 395 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 MAST2Q6P0Q8 1798 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 NPTXRO95502 500 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 ZKSCAN1P17029 563 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 YY1P25490 414 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 GSTT1P30711 240 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 MDH1P40925 334 aaKnown RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 GUCY2FP51841 1108 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 GUCY2DQ02846 1103 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 NKX1-1Q15270 411 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 MUM1Q2TAK8 710 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 AKAP4Q5JQC9 854 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 ZMYM1Q5SVZ6 1142 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 CCDC102BQ68D86 513 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 IQCEQ6IPM2 695 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 KANK3Q6NY19 840 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 SMYD1Q8NB12 490 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 CABLES1Q8TDN4 633 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 DMAP1Q9NPF5 467 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 SPG7Q9UQ90 795 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 SH3GLB1Q9Y371 365 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 DAAM1Q9Y4D1 1078 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 HGSO14964 777 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 KCNQ3O43525 872 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 RAD21O60216 631 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 ATF3P18847 181 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 CASP7P55210 303 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 PABPC4Q13310 644 aaKnown RBP eCLIP7.55□□□□□ -1.23e-6■■■■□ 26.6
VPS13B-205ENST00000493587 MAP7Q14244 749 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 WDR60Q8WVS4 1066 aa7.55□□□□□ -1.2
VPS13B-205ENST00000493587 SUCLA2Q9P2R7 463 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-205ENST00000493587 PALM3A6NDB9 673 aaPredicted RBP7.54□□□□□ -1.2
VPS13B-205ENST00000493587 AKR1B10O60218 316 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms