RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 MTMR8Q96EF0 704 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 RSRC1Q96IZ7 334 aaKnown RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 NAPBQ9H115 298 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 EPB41L4AQ9HCS5 686 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 SLC12A6Q9UHW9 1150 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 AFDNP55196 1824 aaKnown RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 GCOM1H8Y6P7 765 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 AKR1B10O60218 316 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 BUB1BO60566 1050 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 MYZAPP0CAP1 466 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 MCM7P33993 719 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 MAP2K1Q02750 393 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 MFSD6Q6ZSS7 791 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 IFNL3Q8IZI9 196 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 CSGALNACT2Q8N6G5 542 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 PROCA1Q8NCQ7 364 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 NOC3LQ8WTT2 800 aaKnown RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 STRBPQ96SI9 672 aaKnown RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 PLIN2Q99541 437 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 RMND1Q9NWS8 449 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 CNOT8Q9UFF9 292 aaKnown RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 AXIN2Q9Y2T1 843 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 EID1Q9Y6B2 187 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 HLTFQ14527 1009 aaKnown RBP eCLIP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 ZKSCAN8Q15776 578 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 KLHDC7AQ5VTJ3 777 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 MSL1Q68DK7 614 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 TMC4Q7Z404 712 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 ARFGAP2Q8N6H7 521 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 TCP11Q8WWU5 503 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 RAPGEF5Q92565 580 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 NUP58Q9BVL2 599 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 V9GY48 417 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 EPHB6O15197 1021 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 RASSF7Q02833 373 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 PKN1Q16512 942 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 AKNAD1Q5T1N1 836 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 CPLX4Q7Z7G2 160 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 ZNF654Q8IZM8 581 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 MREGQ8N565 214 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 CCT6BQ92526 530 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 FAM207AQ9NSI2 230 aaPredicted RBP12.94□□□□□ -0.34
HDAC4-210ENST00000493582 DCDC2CA8MYV0 355 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 CLTAP09496 248 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 MAGEA1P43355 309 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 ATP2C1P98194 919 aaPredicted RBP12.94□□□□□ -0.34
HDAC4-210ENST00000493582 KCNB1Q14721 858 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 PNMA8AQ86V59 439 aaPredicted RBP12.94□□□□□ -0.34
HDAC4-210ENST00000493582 KLHL7Q8IXQ5 586 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 LMBR1Q8WVP7 490 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 CUL5Q93034 780 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 RBM33Q96EV2 1170 aaKnown RBP12.94□□□□□ -0.34
HDAC4-210ENST00000493582 PHF20Q9BVI0 1012 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 THAP9Q9H5L6 903 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 PACSIN2Q9UNF0 486 aaPredicted RBP12.94□□□□□ -0.34
HDAC4-210ENST00000493582 SLC4A4Q9Y6R1 1079 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 C5P01031 1676 aa12.94□□□□□ -0.34
HDAC4-210ENST00000493582 ERICH2A1L162 156 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 NBPF26B4DH59 902 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 PRKAB2O43741 272 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 PDE6AP16499 860 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 HSD17B3P37058 310 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 MTIF2P46199 727 aaKnown RBP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 SLC8A3P57103 927 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 IFFO1Q0D2I5 559 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 TTI2Q6NXR4 508 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 NBPF10Q6P3W6 841 aaKnown RBP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 NBPF15Q8N660 670 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 MAB21L3Q8N8X9 362 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 NOC4LQ9BVI4 516 aaKnown RBP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 ENO4A6NNW6 628 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 XBP1P17861 261 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 STAT6P42226 847 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 GFPT1Q06210 699 aaPredicted RBP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 LACTB2Q53H82 288 aaPredicted RBP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 GKAP1Q5VSY0 366 aaPredicted RBP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 LMOD2Q6P5Q4 547 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 DDX42Q86XP3 938 aaKnown RBP eCLIP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 RETREG2Q8NC44 543 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 DUSP9Q99956 384 aaKnown RBP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 PLAGL2Q9UPG8 496 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 SRRM3A6NNA2 597 aaPredicted RBP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 PSMA7O14818 248 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 RAD51CO43502 376 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 FTCDO95954 541 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 WHAMMQ8TF30 809 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 CNOT6LQ96LI5 555 aaKnown RBP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 ARMT1Q9H993 441 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 NOVA2Q9UNW9 492 aaKnown RBP12.93□□□□□ -0.34
HDAC4-210ENST00000493582 PHF8Q9UPP1 1060 aa12.93□□□□□ -0.34
HDAC4-210ENST00000493582 ANP32DO95626 131 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 CTNNA1P35221 906 aaKnown RBP12.92□□□□□ -0.34
HDAC4-210ENST00000493582 ZNF844Q08AG5 666 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 UAP1Q16222 522 aaPredicted RBP12.92□□□□□ -0.34
HDAC4-210ENST00000493582 MIIPQ5JXC2 388 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 RCSD1Q6JBY9 416 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 KCNH5Q8NCM2 988 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 LPIN2Q92539 896 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 HOOK2Q96ED9 719 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms