RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 RUFY4Q6ZNE9 571 aa7.55□□□□□ -1.2
SCN1A-206ENST00000491429 RGS22Q8NE09 1264 aa7.55□□□□□ -1.2
SCN1A-206ENST00000491429 TSPAN17Q96FV3 270 aa7.55□□□□□ -1.2
SCN1A-206ENST00000491429 TM9SF2Q99805 663 aa7.55□□□□□ -1.2
SCN1A-206ENST00000491429 SPATA6Q9NWH7 488 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-206ENST00000491429 SMPD4Q9NXE4 827 aa7.55□□□□□ -1.2
SCN1A-206ENST00000491429 RWDD3Q9Y3V2 267 aa7.55□□□□□ -1.2
SCN1A-206ENST00000491429 ITGA4P13612 1032 aa7.54□□□□□ -1.2
SCN1A-206ENST00000491429 TNFRSF1AP19438 455 aa7.54□□□□□ -1.2
SCN1A-206ENST00000491429 ERCC3P19447 782 aa7.54□□□□□ -1.2
SCN1A-206ENST00000491429 POU4F1Q01851 419 aa7.54□□□□□ -1.2
SCN1A-206ENST00000491429 PPP2R5DQ14738 602 aa7.54□□□□□ -1.2
SCN1A-206ENST00000491429 ZNF761Q86XN6 746 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-206ENST00000491429 FERD3LQ96RJ6 166 aa7.54□□□□□ -1.2
SCN1A-206ENST00000491429 RBM15Q96T37 977 aaKnown RBP eCLIP7.54□□□□□ -1.2
SCN1A-206ENST00000491429 CBFA2T2O43439 604 aa7.53□□□□□ -1.2
SCN1A-206ENST00000491429 AKAP8O43823 692 aaKnown RBP7.53□□□□□ -1.2
SCN1A-206ENST00000491429 IMPDH2P12268 514 aa7.53□□□□□ -1.2
SCN1A-206ENST00000491429 SARSP49591 514 aaKnown RBP7.53□□□□□ -1.2
SCN1A-206ENST00000491429 RCSD1Q6JBY9 416 aa7.53□□□□□ -1.2
SCN1A-206ENST00000491429 PPP1R11O60927 126 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-206ENST00000491429 FBXW10Q5XX13 1052 aa7.52□□□□□ -1.21
SCN1A-206ENST00000491429 CABP7Q86V35 215 aa7.52□□□□□ -1.21
SCN1A-206ENST00000491429 LZTR1Q8N653 840 aa7.52□□□□□ -1.21
SCN1A-206ENST00000491429 ADCY4Q8NFM4 1077 aa7.52□□□□□ -1.21
SCN1A-206ENST00000491429 ZBTB8AQ96BR9 441 aa7.52□□□□□ -1.21
SCN1A-206ENST00000491429 KRTAP3-1Q9BYR8 98 aa7.52□□□□□ -1.21
SCN1A-206ENST00000491429 NTMQ9P121 344 aa7.52□□□□□ -1.21
SCN1A-206ENST00000491429 ZNF214Q9UL59 606 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-206ENST00000491429 PPT2Q9UMR5 302 aa7.52□□□□□ -1.21
SCN1A-206ENST00000491429 STXBP3O00186 592 aa7.51□□□□□ -1.21
SCN1A-206ENST00000491429 MATN3O15232 486 aa7.51□□□□□ -1.21
SCN1A-206ENST00000491429 GUCY2CP25092 1073 aa7.51□□□□□ -1.21
SCN1A-206ENST00000491429 ZXDAP98168 799 aa7.51□□□□□ -1.21
SCN1A-206ENST00000491429 CACNB2Q08289 660 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-206ENST00000491429 SMAD4Q13485 552 aaKnown RBP7.51□□□□□ -1.21
SCN1A-206ENST00000491429 CCDC27Q2M243 656 aa7.51□□□□□ -1.21
SCN1A-206ENST00000491429 LDLRAD1Q5T700 205 aa7.51□□□□□ -1.21
SCN1A-206ENST00000491429 GIPC2Q8TF65 315 aa7.51□□□□□ -1.21
SCN1A-206ENST00000491429 CPA5Q8WXQ8 436 aa7.51□□□□□ -1.21
SCN1A-206ENST00000491429 BCL2L13Q9BXK5 485 aa7.51□□□□□ -1.21
SCN1A-206ENST00000491429 A0A087WZG4 1122 aa7.5□□□□□ -1.21
SCN1A-206ENST00000491429 AURKAO14965 403 aa7.5□□□□□ -1.21
SCN1A-206ENST00000491429 TRIM26Q12899 539 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-206ENST00000491429 EEF1DP3Q658K8 133 aa7.5□□□□□ -1.21
SCN1A-206ENST00000491429 DDX11Q96FC9 970 aa7.5□□□□□ -1.21
SCN1A-206ENST00000491429 PEX11GQ96HA9 241 aa7.5□□□□□ -1.21
SCN1A-206ENST00000491429 MTA3Q9BTC8 594 aa7.5□□□□□ -1.21
SCN1A-206ENST00000491429 GULP1Q9UBP9 304 aa7.5□□□□□ -1.21
SCN1A-206ENST00000491429 DIS3Q9Y2L1 958 aaKnown RBP7.5□□□□□ -1.21
SCN1A-206ENST00000491429 LTBP3Q9NS15 1303 aa7.5□□□□□ -1.21
SCN1A-206ENST00000491429 VAMP4O75379 141 aa7.49□□□□□ -1.21
SCN1A-206ENST00000491429 SLC9A5Q14940 896 aa7.49□□□□□ -1.21
SCN1A-206ENST00000491429 TCEAL1Q15170 157 aa7.49□□□□□ -1.21
SCN1A-206ENST00000491429 CPNE8Q86YQ8 564 aa7.49□□□□□ -1.21
SCN1A-206ENST00000491429 NETO2Q8NC67 525 aa7.49□□□□□ -1.21
SCN1A-206ENST00000491429 ADAMTS17Q8TE56 1095 aa7.49□□□□□ -1.21
SCN1A-206ENST00000491429 SYT3Q9BQG1 590 aa7.49□□□□□ -1.21
SCN1A-206ENST00000491429 NUDT5Q9UKK9 219 aa7.49□□□□□ -1.21
SCN1A-206ENST00000491429 DPY19L1Q2PZI1 675 aa7.48□□□□□ -1.21
SCN1A-206ENST00000491429 TTLL7Q6ZT98 887 aa7.48□□□□□ -1.21
SCN1A-206ENST00000491429 RBBP8NLQ8NC74 664 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-206ENST00000491429 C8orf49Q96NF6 230 aa7.48□□□□□ -1.21
SCN1A-206ENST00000491429 HAUS7Q99871 368 aa7.48□□□□□ -1.21
SCN1A-206ENST00000491429 SIT1Q9Y3P8 196 aa7.48□□□□□ -1.21
SCN1A-206ENST00000491429 C8BP07358 591 aa7.47□□□□□ -1.21
SCN1A-206ENST00000491429 TBC1D10BQ4KMP7 808 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-206ENST00000491429 CPZQ66K79 652 aa7.47□□□□□ -1.21
SCN1A-206ENST00000491429 WWC2Q6AWC2 1192 aa7.47□□□□□ -1.21
SCN1A-206ENST00000491429 LINC00482Q8N8I6 264 aa7.47□□□□□ -1.21
SCN1A-206ENST00000491429 TMEM87AQ8NBN3 555 aa7.47□□□□□ -1.21
SCN1A-206ENST00000491429 LOXL4Q96JB6 756 aa7.47□□□□□ -1.21
SCN1A-206ENST00000491429 GORASP1Q9BQQ3 440 aa7.47□□□□□ -1.21
SCN1A-206ENST00000491429 WHRNQ9P202 907 aa7.47□□□□□ -1.21
SCN1A-206ENST00000491429 PLATP00750 562 aa7.46□□□□□ -1.22
SCN1A-206ENST00000491429 PDIA4P13667 645 aaKnown RBP7.46□□□□□ -1.22
SCN1A-206ENST00000491429 ZNF20P17024 532 aa7.46□□□□□ -1.22
SCN1A-206ENST00000491429 SEPHS1P49903 392 aa7.46□□□□□ -1.22
SCN1A-206ENST00000491429 ZNF394Q53GI3 561 aa7.46□□□□□ -1.22
SCN1A-206ENST00000491429 ZNF326Q5BKZ1 582 aaKnown RBP7.46□□□□□ -1.22
SCN1A-206ENST00000491429 RNF34Q969K3 372 aa7.46□□□□□ -1.22
SCN1A-206ENST00000491429 KLHL25Q9H0H3 589 aa7.46□□□□□ -1.22
SCN1A-206ENST00000491429 PCDHGB7Q9Y5F8 929 aa7.46□□□□□ -1.22
SCN1A-206ENST00000491429 C2orf71A6NGG8 1288 aa7.45□□□□□ -1.22
SCN1A-206ENST00000491429 SMARCA5O60264 1052 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-206ENST00000491429 ZBTB7AO95365 584 aa7.45□□□□□ -1.22
SCN1A-206ENST00000491429 CYP2C8P10632 490 aa7.45□□□□□ -1.22
SCN1A-206ENST00000491429 RGL3Q3MIN7 710 aa7.45□□□□□ -1.22
SCN1A-206ENST00000491429 SAMD11Q96NU1 681 aa7.45□□□□□ -1.22
SCN1A-206ENST00000491429 PCDHB10Q9UN67 800 aa7.45□□□□□ -1.22
SCN1A-206ENST00000491429 BACE2Q9Y5Z0 518 aa7.45□□□□□ -1.22
SCN1A-206ENST00000491429 C1QTNF3-AMACRE9PGA6 284 aa7.44□□□□□ -1.22
SCN1A-206ENST00000491429 NTRK1P04629 796 aa7.44□□□□□ -1.22
SCN1A-206ENST00000491429 GNPTABQ3T906 1256 aa7.44□□□□□ -1.22
SCN1A-206ENST00000491429 CCDC81Q6ZN84 652 aa7.44□□□□□ -1.22
SCN1A-206ENST00000491429 SLC16A11Q8NCK7 471 aa7.44□□□□□ -1.22
SCN1A-206ENST00000491429 USP33Q8TEY7 942 aa7.44□□□□□ -1.22
SCN1A-206ENST00000491429 FGD4Q96M96 766 aa7.44□□□□□ -1.22
SCN1A-206ENST00000491429 C11orf84Q9BUA3 381 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-206ENST00000491429 C1QTNF3Q9BXJ4 246 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms