RNA–Protein interactions for RNA: ENST00000490283.1

SEC13-218, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-218ENST00000490283 JMJD4Q9H9V9 463 aa20.31■□□□□ 0.84
SEC13-218ENST00000490283 TRIOBPQ9H2D6 2365 aa20.3■□□□□ 0.84
SEC13-218ENST00000490283 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.3■□□□□ 0.84
SEC13-218ENST00000490283 ADCY6O43306 1168 aa20.3■□□□□ 0.84
SEC13-218ENST00000490283 GRM4Q14833 912 aa20.3■□□□□ 0.84
SEC13-218ENST00000490283 MB21D2Q8IYB1 491 aaPredicted RBP20.3■□□□□ 0.84
SEC13-218ENST00000490283 MAD2L2Q9UI95 211 aa20.3■□□□□ 0.84
SEC13-218ENST00000490283 TAF6LQ9Y6J9 622 aa20.3■□□□□ 0.84
SEC13-218ENST00000490283 SMCHD1A6NHR9 2005 aa20.3■□□□□ 0.84
SEC13-218ENST00000490283 ELP1O95163 1332 aa20.29■□□□□ 0.84
SEC13-218ENST00000490283 PALM3A6NDB9 673 aaPredicted RBP20.29■□□□□ 0.84
SEC13-218ENST00000490283 MYADML2A6NDP7 307 aa20.29■□□□□ 0.84
SEC13-218ENST00000490283 PQBP1O60828 265 aaKnown RBP20.29■□□□□ 0.84
SEC13-218ENST00000490283 CDC45O75419 566 aa20.29■□□□□ 0.84
SEC13-218ENST00000490283 ASGR1P07306 291 aa20.29■□□□□ 0.84
SEC13-218ENST00000490283 MCM5P33992 734 aa20.29■□□□□ 0.84
SEC13-218ENST00000490283 TLE2Q04725 743 aa20.29■□□□□ 0.84
SEC13-218ENST00000490283 TDHQ8IZJ6 230 aa20.29■□□□□ 0.84
SEC13-218ENST00000490283 MTA3Q9BTC8 594 aa20.29■□□□□ 0.84
SEC13-218ENST00000490283 Q9Y3F1 56 aa20.29■□□□□ 0.84
SEC13-218ENST00000490283 MROH7Q68CQ1 1323 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 DCDC2CA8MYV0 355 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 SLC27A2O14975 620 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 ZBTB5O15062 677 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 DYNC1LI2O43237 492 aaPredicted RBP20.28■□□□□ 0.84
SEC13-218ENST00000490283 PRC1O43663 620 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 CLTBP09497 229 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 SMPD1P17405 629 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 CREB3L3Q68CJ9 461 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 CCSAPQ6IQ19 270 aaPredicted RBP20.28■□□□□ 0.84
SEC13-218ENST00000490283 TAPT1Q6NXT6 567 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 NFXL1Q6ZNB6 911 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 SKAP1Q86WV1 359 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 HOMER1Q86YM7 354 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 TMTC2Q8N394 836 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 CTCFLQ8NI51 663 aaPredicted RBP20.28■□□□□ 0.84
SEC13-218ENST00000490283 PDLIM7Q9NR12 457 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 PDGFCQ9NRA1 345 aa20.28■□□□□ 0.84
SEC13-218ENST00000490283 GNEQ9Y223 722 aaKnown RBP20.28■□□□□ 0.84
SEC13-218ENST00000490283 DDX49Q9Y6V7 483 aaKnown RBP20.28■□□□□ 0.84
SEC13-218ENST00000490283 MCM3APO60318 1980 aa20.27■□□□□ 0.84
SEC13-218ENST00000490283 A0A0U1RQG5 324 aaPredicted RBP20.27■□□□□ 0.84
SEC13-218ENST00000490283 CABYRO75952 493 aa20.27■□□□□ 0.84
SEC13-218ENST00000490283 KIF5BP33176 963 aa20.27■□□□□ 0.84
SEC13-218ENST00000490283 ANTXR2P58335 489 aa20.27■□□□□ 0.84
SEC13-218ENST00000490283 NKX3-2P78367 333 aa20.27■□□□□ 0.84
SEC13-218ENST00000490283 BEX3Q00994 111 aa20.27■□□□□ 0.84
SEC13-218ENST00000490283 FSCN1Q16658 493 aaKnown RBP20.27■□□□□ 0.84
SEC13-218ENST00000490283 TMEM87BQ96K49 555 aa20.27■□□□□ 0.84
SEC13-218ENST00000490283 WDR11Q9BZH6 1224 aa20.27■□□□□ 0.84
SEC13-218ENST00000490283 CCDC69A6NI79 296 aa20.26■□□□□ 0.83
SEC13-218ENST00000490283 DDAH1O94760 285 aa20.26■□□□□ 0.83
SEC13-218ENST00000490283 CFBP00751 764 aa20.26■□□□□ 0.83
SEC13-218ENST00000490283 TROAPQ12815 778 aa20.26■□□□□ 0.83
SEC13-218ENST00000490283 PPP2R5BQ15173 497 aa20.26■□□□□ 0.83
SEC13-218ENST00000490283 DUSP28Q4G0W2 176 aa20.26■□□□□ 0.83
SEC13-218ENST00000490283 BRDTQ58F21 947 aaPredicted RBP20.26■□□□□ 0.83
SEC13-218ENST00000490283 IGDCC4Q8TDY8 1250 aa20.26■□□□□ 0.83
SEC13-218ENST00000490283 NSUN6Q8TEA1 469 aaKnown RBP20.26■□□□□ 0.83
SEC13-218ENST00000490283 SCFD2Q8WU76 684 aa20.26■□□□□ 0.83
SEC13-218ENST00000490283 TOX2Q96NM4 488 aa20.26■□□□□ 0.83
SEC13-218ENST00000490283 PCDHA1Q9Y5I3 950 aa20.26■□□□□ 0.83
SEC13-218ENST00000490283 NKRFO15226 690 aaKnown RBP eCLIP20.25■□□□□ 0.83
SEC13-218ENST00000490283 TLR3O15455 904 aaKnown RBP20.25■□□□□ 0.83
SEC13-218ENST00000490283 EDNRBP24530 442 aa20.25■□□□□ 0.83
SEC13-218ENST00000490283 IRX5P78411 483 aaPredicted RBP20.25■□□□□ 0.83
SEC13-218ENST00000490283 NECTIN1Q15223 517 aa20.25■□□□□ 0.83
SEC13-218ENST00000490283 ANKRD33Q7Z3H0 272 aa20.25■□□□□ 0.83
SEC13-218ENST00000490283 ZNF654Q8IZM8 581 aa20.25■□□□□ 0.83
SEC13-218ENST00000490283 SYTL5Q8TDW5 730 aaPredicted RBP20.25■□□□□ 0.83
SEC13-218ENST00000490283 MTMR8Q96EF0 704 aa20.25■□□□□ 0.83
SEC13-218ENST00000490283 MAP3K14Q99558 947 aa20.25■□□□□ 0.83
SEC13-218ENST00000490283 LY9Q9HBG7 655 aa20.25■□□□□ 0.83
SEC13-218ENST00000490283 SENP2Q9HC62 589 aa20.25■□□□□ 0.83
SEC13-218ENST00000490283 TMEM39AQ9NV64 488 aa20.25■□□□□ 0.83
SEC13-218ENST00000490283 RAG1P15918 1043 aa20.24■□□□□ 0.83
SEC13-218ENST00000490283 CPT1AP50416 773 aa20.24■□□□□ 0.83
SEC13-218ENST00000490283 ARHGEF16Q5VV41 709 aa20.24■□□□□ 0.83
SEC13-218ENST00000490283 SAMD3Q8N6K7 520 aa20.24■□□□□ 0.83
SEC13-218ENST00000490283 OR6J1Q8NGC5 347 aa20.24■□□□□ 0.83
SEC13-218ENST00000490283 PIGSQ96S52 555 aa20.24■□□□□ 0.83
SEC13-218ENST00000490283 IWS1Q96ST2 819 aa20.24■□□□□ 0.83
SEC13-218ENST00000490283 RMDN3Q96TC7 470 aa20.24■□□□□ 0.83
SEC13-218ENST00000490283 RIOX1Q9H6W3 641 aa20.24■□□□□ 0.83
SEC13-218ENST00000490283 MAP3K20Q9NYL2 800 aaKnown RBP20.24■□□□□ 0.83
SEC13-218ENST00000490283 LRRC37A2A6NM11 1700 aa20.24■□□□□ 0.83
SEC13-218ENST00000490283 PNMA6FA0A0J9YX94 578 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 RBM47A0AV96 593 aaKnown RBP20.23■□□□□ 0.83
SEC13-218ENST00000490283 TRIM43BA6NCK2 446 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 ARVCFO00192 962 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 SH2B2O14492 632 aaPredicted RBP20.23■□□□□ 0.83
SEC13-218ENST00000490283 CTAGE5O15320 804 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 CALM1P0DP23 149 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 CALM2P0DP24 149 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 CALM3P0DP25 149 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 GNAQP50148 359 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 TTLL4Q14679 1199 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 STXBP2Q15833 593 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 CXCL17Q6UXB2 119 aa20.23■□□□□ 0.83
SEC13-218ENST00000490283 TBC1D5Q92609 795 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms