RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 MORC4Q8TE76 937 aa9.77□□□□□ -0.85
USP39-216ENST00000490193 APPBP2Q92624 585 aa9.77□□□□□ -0.85
USP39-216ENST00000490193 GMCL1Q96IK5 515 aa9.77□□□□□ -0.85
USP39-216ENST00000490193 AGBL1Q96MI9 1066 aa9.77□□□□□ -0.85
USP39-216ENST00000490193 AP5M1Q9H0R1 490 aa9.77□□□□□ -0.85
USP39-216ENST00000490193 EPB41L4AQ9HCS5 686 aaPredicted RBP9.77□□□□□ -0.85
USP39-216ENST00000490193 DDX19BQ9UMR2 479 aa9.77□□□□□ -0.85
USP39-216ENST00000490193 ARIH1Q9Y4X5 557 aaPredicted RBP9.77□□□□□ -0.85
USP39-216ENST00000490193 SLC4A7Q9Y6M7 1214 aa9.77□□□□□ -0.85
USP39-216ENST00000490193 SCN10AQ9Y5Y9 1956 aa9.77□□□□□ -0.85
USP39-216ENST00000490193 SCN5AQ14524 2016 aa9.77□□□□□ -0.85
USP39-216ENST00000490193 MINDY4BA8MYZ0 360 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 ERC2O15083 957 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 SMPD1P17405 629 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 GNAT2P19087 354 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 STAT2P52630 851 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 CCL23P55773 120 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 VARS2Q5ST30 1063 aaKnown RBP9.76□□□□□ -0.85
USP39-216ENST00000490193 PPP2R2DQ66LE6 453 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 SLFN13Q68D06 897 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 TAPT1Q6NXT6 567 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 ZNF444Q8N0Y2 327 aaPredicted RBP9.76□□□□□ -0.85
USP39-216ENST00000490193 LRRC47Q8N1G4 583 aaKnown RBP9.76□□□□□ -0.85
USP39-216ENST00000490193 NEDD1Q8NHV4 660 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 CHURC1Q8WUH1 139 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 OSBP2Q969R2 916 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 C1QTNF1Q9BXJ1 281 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 LRRCC1Q9C099 1032 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 TRPV6Q9H1D0 765 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 HOMER2Q9NSB8 354 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 RNF146Q9NTX7 359 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 COG6Q9Y2V7 657 aa9.76□□□□□ -0.85
USP39-216ENST00000490193 PRRC2BQ5JSZ5 2229 aaKnown RBP9.76□□□□□ -0.85
USP39-216ENST00000490193 LOC102724159A0A0B4J2E5 919 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 TMEM232C9JQI7 657 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 DYNC1LI2O43237 492 aaPredicted RBP9.75□□□□□ -0.85
USP39-216ENST00000490193 GPAA1O43292 621 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 ZFYP08048 801 aaPredicted RBP9.75□□□□□ -0.85
USP39-216ENST00000490193 SUPT20HL2P0C7V6 817 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 ATP2A2P16615 1042 aaKnown RBP9.75□□□□□ -0.85
USP39-216ENST00000490193 RABGGTBP53611 331 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 HNRNPUQ00839 825 aaKnown RBP eCLIP9.75□□□□□ -0.85
USP39-216ENST00000490193 PWP2Q15269 919 aaKnown RBP9.75□□□□□ -0.85
USP39-216ENST00000490193 NOL8Q76FK4 1167 aaKnown RBP9.75□□□□□ -0.85
USP39-216ENST00000490193 STAG1Q8WVM7 1258 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 TRERF1Q96PN7 1200 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 ALDH8A1Q9H2A2 487 aaPredicted RBP9.75□□□□□ -0.85
USP39-216ENST00000490193 CHMP4BQ9H444 224 aaKnown RBP9.75□□□□□ -0.85
USP39-216ENST00000490193 VTA1Q9NP79 307 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 ECHDC1Q9NTX5 307 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 CYP39A1Q9NYL5 469 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 MTCH2Q9Y6C9 303 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 PTPRSQ13332 1948 aa9.75□□□□□ -0.85
USP39-216ENST00000490193 COL4A4P53420 1690 aaPredicted RBP9.74□□□□□ -0.85
USP39-216ENST00000490193 RNF113AO15541 343 aaKnown RBP9.74□□□□□ -0.85
USP39-216ENST00000490193 PRDM1O75626 825 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 MYOGP15173 224 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 TDO2P48775 406 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 PSMC6P62333 389 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 TFF2Q03403 129 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 DUSP28Q4G0W2 176 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 PPP4R3BQ5MIZ7 849 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 STK11IPQ8N1F8 1099 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 PHOSPHO2Q8TCD6 241 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 SCLYQ96I15 445 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 NECAB3Q96P71 396 aaPredicted RBP9.74□□□□□ -0.85
USP39-216ENST00000490193 SLC9A7Q96T83 725 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 PDGFCQ9NRA1 345 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 POLR3EQ9NVU0 708 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 COG5Q9UP83 839 aa9.74□□□□□ -0.85
USP39-216ENST00000490193 RBM47A0AV96 593 aaKnown RBP9.73□□□□□ -0.85
USP39-216ENST00000490193 ZBBXA8MT70 800 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 PATL2C9JE40 543 aaKnown RBP9.73□□□□□ -0.85
USP39-216ENST00000490193 CA3P07451 260 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 TSPY3P0CV98 308 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 TSPY8P0CW00 308 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 ALAS1P13196 640 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 PTGS1P23219 599 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 RFC2P35250 354 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 SLC1A4P43007 532 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 KCNQ1P51787 676 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 PURAQ00577 322 aaKnown RBP9.73□□□□□ -0.85
USP39-216ENST00000490193 PDE4BQ07343 736 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 TTLL4Q14679 1199 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 MUM1L1Q5H9M0 696 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 TMEM67Q5HYA8 995 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 TMEM63BQ5T3F8 832 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 FBXO16Q8IX29 292 aaPredicted RBP9.73□□□□□ -0.85
USP39-216ENST00000490193 IFNL3Q8IZI9 196 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 BCL11AQ9H165 835 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 TNKSO95271 1327 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 TET1Q8NFU7 2136 aa9.73□□□□□ -0.85
USP39-216ENST00000490193 M0R2C6 588 aa9.72□□□□□ -0.85
USP39-216ENST00000490193 GTPBP6O43824 516 aaPredicted RBP9.72□□□□□ -0.85
USP39-216ENST00000490193 ICAM1P05362 532 aa9.72□□□□□ -0.85
USP39-216ENST00000490193 ACTN1P12814 892 aa9.72□□□□□ -0.85
USP39-216ENST00000490193 NOVP48745 357 aa9.72□□□□□ -0.85
USP39-216ENST00000490193 CPT1AP50416 773 aa9.72□□□□□ -0.85
USP39-216ENST00000490193 TFAP4Q01664 338 aa9.72□□□□□ -0.85
USP39-216ENST00000490193 IKQ13123 557 aaPredicted RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms