RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ATF2P15336 505 aa5.29□□□□□ -1.56
CPSF3-205ENST00000489629 PPP2R5EQ16537 467 aa5.29□□□□□ -1.56
CPSF3-205ENST00000489629 DPY19L1Q2PZI1 675 aa5.29□□□□□ -1.56
CPSF3-205ENST00000489629 KIAA1211LQ6NV74 962 aa5.29□□□□□ -1.56
CPSF3-205ENST00000489629 VHLLQ6RSH7 139 aa5.29□□□□□ -1.56
CPSF3-205ENST00000489629 PWWP2AQ96N64 755 aa5.29□□□□□ -1.56
CPSF3-205ENST00000489629 MTA3Q9BTC8 594 aa5.29□□□□□ -1.56
CPSF3-205ENST00000489629 KRTAP4-2Q9BYR5 136 aa5.29□□□□□ -1.56
CPSF3-205ENST00000489629 APEX2Q9UBZ4 518 aa5.29□□□□□ -1.56
CPSF3-205ENST00000489629 STRIP2Q9ULQ0 834 aa5.29□□□□□ -1.56
CPSF3-205ENST00000489629 A0A1W2PQJ5 194 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 ANKRD34BA5PLL1 514 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 F8W031 263 aaPredicted RBP5.28□□□□□ -1.56
CPSF3-205ENST00000489629 FFAR3O14843 346 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 PFKLP17858 780 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 PRR5P85299 388 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 AMPD2Q01433 879 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 LINC01356Q8N9X3 169 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 CPLX3Q8WVH0 158 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 RELTQ969Z4 430 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 RTEL1Q9NZ71 1219 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 EMC9Q9Y3B6 208 aa5.28□□□□□ -1.56
CPSF3-205ENST00000489629 OTOL1A6NHN0 477 aaPredicted RBP5.27□□□□□ -1.57
CPSF3-205ENST00000489629 PLA2G1BP04054 148 aaKnown RBP5.27□□□□□ -1.57
CPSF3-205ENST00000489629 ATF4P18848 351 aaPredicted RBP5.27□□□□□ -1.57
CPSF3-205ENST00000489629 LIMS1P48059 325 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 SEPHS1P49903 392 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 HTRA3P83110 453 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 TARBP2Q15633 366 aaKnown RBP5.27□□□□□ -1.57
CPSF3-205ENST00000489629 VWA3BQ502W6 1294 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 CPNE8Q86YQ8 564 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 COPS5Q92905 334 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 TSPAN17Q96FV3 270 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 RNF38Q9H0F5 515 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 LUC7LQ9NQ29 371 aaKnown RBP5.27□□□□□ -1.57
CPSF3-205ENST00000489629 AKT3Q9Y243 479 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 INPP5FQ9Y2H2 1132 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 RWDD3Q9Y3V2 267 aa5.27□□□□□ -1.57
CPSF3-205ENST00000489629 C7orf72A4D263 438 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 SASH1O94885 1247 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 PAMP19021 973 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 BUD31P41223 144 aaPredicted RBP5.26□□□□□ -1.57
CPSF3-205ENST00000489629 ZNF143P52747 638 aaPredicted RBP5.26□□□□□ -1.57
CPSF3-205ENST00000489629 FOXO4P98177 505 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 CYP4F3Q08477 520 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 LZTR1Q8N653 840 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 NETO2Q8NC67 525 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 FEZF2Q8TBJ5 459 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 MRGPRX3Q96LB0 322 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 APBA2Q99767 749 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 KRTAP9-3Q9BYQ3 159 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 RXFP1Q9HBX9 757 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 GULP1Q9UBP9 304 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 SUGT1Q9Y2Z0 365 aa5.26□□□□□ -1.57
CPSF3-205ENST00000489629 TRBV23OR9-2A0A075B6M9 112 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 NPHP3-ACAD11A0A0J9YXS1 232 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 FOXD2O60548 495 aaPredicted RBP5.25□□□□□ -1.57
CPSF3-205ENST00000489629 ASGR2P07307 311 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 NCAM1P13591 858 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 MC3RP41968 323 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 NFIXQ14938 502 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 MBLAC2Q68D91 279 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 SP8Q8IXZ3 490 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 NLGN1Q8N2Q7 840 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 SYT8Q8NBV8 401 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 BVESQ8NE79 360 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 CXorf38Q8TB03 319 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 FNIP1Q8TF40 1166 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 ANAPC16Q96DE5 110 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 MMP19Q99542 508 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 KRTAP4-11Q9BYQ6 195 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 CCSER2Q9H7U1 834 aa5.25□□□□□ -1.57
CPSF3-205ENST00000489629 KCNH1O95259 989 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 PMLP29590 882 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 DLX2Q07687 328 aaPredicted RBP5.24□□□□□ -1.57
CPSF3-205ENST00000489629 SCRN1Q12765 414 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 NCAPHQ15003 741 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 LCE5AQ5TCM9 118 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 GTF2IRD2BQ6EKJ0 949 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 GTF2IRD2Q86UP8 949 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 TRIM59Q8IWR1 403 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 PLEKHO2Q8TD55 490 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 ALG3Q92685 438 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 DPF3Q92784 378 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 BCAS3Q9H6U6 928 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 GPRC5CQ9NQ84 441 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.24□□□□□ -1.57
CPSF3-205ENST00000489629 CLEC1BQ9P126 229 aa5.24□□□□□ -1.57
CPSF3-205ENST00000489629 DBR1Q9UK59 544 aaKnown RBP5.24□□□□□ -1.57
CPSF3-205ENST00000489629 SH3D21A4FU49 640 aa5.23□□□□□ -1.57
CPSF3-205ENST00000489629 NPHS1O60500 1241 aa5.23□□□□□ -1.57
CPSF3-205ENST00000489629 PLS3P13797 630 aa5.23□□□□□ -1.57
CPSF3-205ENST00000489629 SLURP1P55000 103 aa5.23□□□□□ -1.57
CPSF3-205ENST00000489629 SLC9A5Q14940 896 aa5.23□□□□□ -1.57
CPSF3-205ENST00000489629 POMZP3Q6PJE2 187 aa5.23□□□□□ -1.57
CPSF3-205ENST00000489629 B3GNT8Q7Z7M8 397 aa5.23□□□□□ -1.57
CPSF3-205ENST00000489629 SAPCD2Q86UD0 394 aa5.23□□□□□ -1.57
CPSF3-205ENST00000489629 CABP7Q86V35 215 aa5.23□□□□□ -1.57
CPSF3-205ENST00000489629 CRACR2BQ8N4Y2 399 aaPredicted RBP5.23□□□□□ -1.57
CPSF3-205ENST00000489629 CPA5Q8WXQ8 436 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms