RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 CAVIN1Q6NZI2 390 aaKnown RBP13.08□□□□□ -0.32
C9orf3-220ENST00000489318 FASTKD5Q7L8L6 764 aaKnown RBP13.08□□□□□ -0.32
C9orf3-220ENST00000489318 C2orf69Q8N8R5 385 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 ENGASEQ8NFI3 743 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 CLEC4DQ8WXI8 215 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 SYAP1Q96A49 352 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-220ENST00000489318 WNK4Q96J92 1243 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 AGBL1Q96MI9 1066 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 MBOAT7Q96N66 472 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 NAP1L4Q99733 375 aaKnown RBP13.08□□□□□ -0.32
C9orf3-220ENST00000489318 GOLPH3LQ9H4A5 285 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 ZNF408Q9H9D4 720 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 DDX19AQ9NUU7 478 aaKnown RBP13.08□□□□□ -0.32
C9orf3-220ENST00000489318 HOXC10Q9NYD6 342 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 HPSEQ9Y251 543 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 FRMPD4Q14CM0 1322 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 LRRC37A2A6NM11 1700 aa13.08□□□□□ -0.32
C9orf3-220ENST00000489318 ATP2B1P20020 1258 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 MCM7P33993 719 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 USP11P51784 963 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 PTGDRQ13258 359 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 SNAPC2Q13487 334 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 SNW1Q13573 536 aaKnown RBP13.07□□□□□ -0.32
C9orf3-220ENST00000489318 ZNF174Q15697 407 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 TKFCQ3LXA3 575 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 CST9Q5W186 159 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 SHC4Q6S5L8 630 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 CCAR1Q8IX12 1150 aaKnown RBP13.07□□□□□ -0.32
C9orf3-220ENST00000489318 MB21D1Q8N884 522 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 TEX13BQ9BXU2 312 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 RAVER2Q9HCJ3 691 aaKnown RBP13.07□□□□□ -0.32
C9orf3-220ENST00000489318 SLC45A1Q9Y2W3 748 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 RPTORQ8N122 1335 aa13.07□□□□□ -0.32
C9orf3-220ENST00000489318 CYP3A7-CYP3A51PA0A087WV96 503 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 SPDYE3A6NKU9 549 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 GCOM1H8Y6P7 765 aaPredicted RBP13.06□□□□□ -0.32
C9orf3-220ENST00000489318 NEMFO60524 1076 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 CYP3A4P08684 503 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 POLR2MP0CAP2 368 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 CYP3A7P24462 503 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 CIITAP33076 1130 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 GRIN1Q05586 938 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 PABPC4Q13310 644 aaKnown RBP eCLIP13.06□□□□□ -0.32
C9orf3-220ENST00000489318 TMEM132BQ14DG7 1078 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 LETM2Q2VYF4 491 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 CCDC183Q5T5S1 534 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 GPAT2Q6NUI2 795 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 POTEEQ6S8J3 1075 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 GADL1Q6ZQY3 521 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 CCDC73Q6ZRK6 1079 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 RBM43Q6ZSC3 357 aaKnown RBP13.06□□□□□ -0.32
C9orf3-220ENST00000489318 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.06□□□□□ -0.32
C9orf3-220ENST00000489318 MCF2L2Q86YR7 1114 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 FMR1NBQ8N0W7 255 aaPredicted RBP13.06□□□□□ -0.32
C9orf3-220ENST00000489318 FSIP1Q8NA03 581 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 ZNF526Q8TF50 670 aaPredicted RBP13.06□□□□□ -0.32
C9orf3-220ENST00000489318 SLC10A4Q96EP9 437 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 MRVI1Q9Y6F6 885 aa13.06□□□□□ -0.32
C9orf3-220ENST00000489318 NFIBO00712 420 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 KIF3CO14782 793 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 CCNT1O60563 726 aaKnown RBP13.05□□□□□ -0.32
C9orf3-220ENST00000489318 NR1I2O75469 434 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 CFBP00751 764 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 OR52Z1P0C646 297 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 ALAS1P13196 640 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 PFKFB1P16118 471 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 ZNF445P59923 1031 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 ARHGAP4P98171 946 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 ZSCAN23Q3MJ62 389 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 SPRYD7Q5W111 196 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 CPXCR1Q8N123 301 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 MS4A4AQ96JQ5 239 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 CLIC6Q96NY7 704 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 MTMR9Q96QG7 549 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 ASCC2Q9H1I8 757 aaPredicted RBP13.05□□□□□ -0.32
C9orf3-220ENST00000489318 TMEM60Q9H2L4 133 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 DACT1Q9NYF0 836 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 RABGAP1Q9Y3P9 1069 aa13.05□□□□□ -0.32
C9orf3-220ENST00000489318 SLC37A4O43826 429 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 TDP2O95551 362 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 CETPP11597 493 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 HOXA13P31271 388 aaPredicted RBP13.04□□□□□ -0.32
C9orf3-220ENST00000489318 LONP1P36776 959 aaKnown RBP13.04□□□□□ -0.32
C9orf3-220ENST00000489318 NDUFA8P51970 172 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 GTF2A2P52657 109 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 HERVK_113P62684 666 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 IRX3P78415 501 aaPredicted RBP13.04□□□□□ -0.32
C9orf3-220ENST00000489318 IL17AQ16552 155 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 MUM1L1Q5H9M0 696 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 SNRNP48Q6IEG0 339 aaKnown RBP13.04□□□□□ -0.32
C9orf3-220ENST00000489318 SAMD1Q6SPF0 538 aaPredicted RBP13.04□□□□□ -0.32
C9orf3-220ENST00000489318 POTEDQ86YR6 584 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 GTF3C2Q8WUA4 911 aaPredicted RBP13.04□□□□□ -0.32
C9orf3-220ENST00000489318 TBC1D5Q92609 795 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 TIGD1Q96MW7 591 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 CSRNP2Q9H175 543 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 CLSTN2Q9H4D0 955 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 EHMT1Q9H9B1 1298 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 GPBP1L1Q9HC44 474 aaPredicted RBP13.04□□□□□ -0.32
C9orf3-220ENST00000489318 RNF146Q9NTX7 359 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms