RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 RRP15Q9Y3B9 282 aaKnown RBP19.25■□□□□ 0.67
NPHP4-209ENST00000489180 IKBKBO14920 756 aa19.25■□□□□ 0.67
NPHP4-209ENST00000489180 DYNLL1P63167 89 aaKnown RBP19.25■□□□□ 0.67
NPHP4-209ENST00000489180 CUL4AQ13619 759 aa19.25■□□□□ 0.67
NPHP4-209ENST00000489180 SNCBQ16143 134 aa19.25■□□□□ 0.67
NPHP4-209ENST00000489180 PPP2R5EQ16537 467 aa19.25■□□□□ 0.67
NPHP4-209ENST00000489180 GALNT17Q6IS24 598 aa19.25■□□□□ 0.67
NPHP4-209ENST00000489180 PI16Q6UXB8 463 aa19.25■□□□□ 0.67
NPHP4-209ENST00000489180 SPATS2Q86XZ4 545 aaKnown RBP19.25■□□□□ 0.67
NPHP4-209ENST00000489180 N4BP1O75113 896 aaKnown RBP19.24■□□□□ 0.67
NPHP4-209ENST00000489180 PABPC4Q13310 644 aaKnown RBP eCLIP19.24■□□□□ 0.67
NPHP4-209ENST00000489180 CERKLQ49MI3 558 aaPredicted RBP19.24■□□□□ 0.67
NPHP4-209ENST00000489180 CFAP61Q8NHU2 1237 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 WDR70Q9NW82 654 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 PHLPP2Q6ZVD8 1323 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 PASKQ96RG2 1323 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 FTCDO95954 541 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 SNX1Q13596 522 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 TRIM50Q86XT4 487 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 LARP4BQ92615 738 aaKnown RBP19.24■□□□□ 0.67
NPHP4-209ENST00000489180 TEKT3Q9BXF9 490 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 METTL14Q9HCE5 456 aaKnown RBP19.24■□□□□ 0.67
NPHP4-209ENST00000489180 MED10Q9BTT4 135 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 ANKFY1Q9P2R3 1169 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 PCDHA4Q9UN74 947 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 RABGAP1Q9Y3P9 1069 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 TMEM232C9JQI7 657 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 PRKAB2O43741 272 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 PDE8BO95263 885 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 TTBK2Q6IQ55 1244 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 PHLDB3Q6NSJ2 640 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 STAG1Q8WVM7 1258 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 RIOK1Q9BRS2 568 aaKnown RBP19.24■□□□□ 0.67
NPHP4-209ENST00000489180 PARD6BQ9BYG5 372 aa19.24■□□□□ 0.67
NPHP4-209ENST00000489180 TYW1Q9NV66 732 aaKnown RBP19.24■□□□□ 0.67
NPHP4-209ENST00000489180 BRDTQ58F21 947 aaPredicted RBP19.23■□□□□ 0.67
NPHP4-209ENST00000489180 KIAA0825Q8IV33 1275 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 LRRC8CQ8TDW0 803 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 P2RX5Q93086 422 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 SCYL1Q96KG9 808 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 NR2F2P24468 414 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 INTS9Q9NV88 658 aaKnown RBP19.23■□□□□ 0.67
NPHP4-209ENST00000489180 PPIP5K2O43314 1243 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 SATB1Q01826 763 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 MLXIPQ9HAP2 919 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 ICA1Q05084 483 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 RPS6KA2Q15349 733 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 MAGOHBQ96A72 148 aaKnown RBP19.23■□□□□ 0.67
NPHP4-209ENST00000489180 SPTLC3Q9NUV7 552 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 PCDHA1Q9Y5I3 950 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 CFAP65Q6ZU64 1925 aaKnown RBP19.23■□□□□ 0.67
NPHP4-209ENST00000489180 RPSAP08865 295 aaKnown RBP19.23■□□□□ 0.67
NPHP4-209ENST00000489180 ODR4Q5SWX8 454 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 SMCR8Q8TEV9 937 aaPredicted RBP19.23■□□□□ 0.67
NPHP4-209ENST00000489180 SUGCTQ9HAC7 445 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 MAD1L1Q9Y6D9 718 aa19.23■□□□□ 0.67
NPHP4-209ENST00000489180 LMTK3Q96Q04 1460 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 SYNJ2BP-COX16A0A087WUM0 186 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 NSFP46459 744 aaKnown RBP19.22■□□□□ 0.67
NPHP4-209ENST00000489180 CLCN6P51797 869 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 ZKSCAN8Q15776 578 aaPredicted RBP19.22■□□□□ 0.67
NPHP4-209ENST00000489180 COX16Q9P0S2 106 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 ATP8A1Q9Y2Q0 1164 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 PIK3CAP42336 1068 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 SLFN13Q68D06 897 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 PAGR1Q9BTK6 254 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 PUS7LQ9H0K6 701 aaKnown RBP19.22■□□□□ 0.67
NPHP4-209ENST00000489180 SOS2Q07890 1332 aaPredicted RBP19.22■□□□□ 0.67
NPHP4-209ENST00000489180 TNNC2P02585 160 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 YWHAGP61981 247 aaKnown RBP eCLIP19.22■□□□□ 0.67
NPHP4-209ENST00000489180 MAP7Q14244 749 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 ARID5BQ14865 1188 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 SIRT2Q8IXJ6 389 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 DDX27Q96GQ7 796 aaKnown RBP19.22■□□□□ 0.67
NPHP4-209ENST00000489180 AIFM3Q96NN9 605 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 PEX19P40855 299 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 ZNF658Q5TYW1 1059 aaPredicted RBP19.22■□□□□ 0.67
NPHP4-209ENST00000489180 FAM133AQ8N9E0 248 aa19.22■□□□□ 0.67
NPHP4-209ENST00000489180 SPATA31E1Q6ZUB1 1445 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 EPHB4P54760 987 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 DMP1Q13316 513 aaPredicted RBP19.21■□□□□ 0.67
NPHP4-209ENST00000489180 CLIC2O15247 247 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 PLTPP55058 493 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 RCOR1Q9UKL0 485 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 MRPL11Q9Y3B7 192 aaKnown RBP19.21■□□□□ 0.67
NPHP4-209ENST00000489180 MMP1P03956 469 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 EEF1GP26641 437 aaKnown RBP19.21■□□□□ 0.67
NPHP4-209ENST00000489180 APBA1Q02410 837 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 LRRN2O75325 713 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 IFRD2Q12894 506 aaPredicted RBP19.21■□□□□ 0.67
NPHP4-209ENST00000489180 CCDC197Q8NCU1 140 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 POMGNT1Q8WZA1 660 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 STK32BQ9NY57 414 aa19.21■□□□□ 0.67
NPHP4-209ENST00000489180 TPX2Q9ULW0 747 aaKnown RBP19.21■□□□□ 0.67
NPHP4-209ENST00000489180 GCC2Q8IWJ2 1684 aa19.2■□□□□ 0.66
NPHP4-209ENST00000489180 SLC8A1P32418 973 aa19.2■□□□□ 0.66
NPHP4-209ENST00000489180 SLC7A5Q01650 507 aa19.2■□□□□ 0.66
NPHP4-209ENST00000489180 VSTM4Q8IW00 320 aa19.2■□□□□ 0.66
NPHP4-209ENST00000489180 RNF26Q9BY78 433 aaPredicted RBP19.2■□□□□ 0.66
NPHP4-209ENST00000489180 LRRIQ4A6NIV6 560 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms