RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 CALM2P0DP24 149 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 CALM3P0DP25 149 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 GNAQP50148 359 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 GJA9P57773 515 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 KRT32Q14532 448 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 GRM4Q14833 912 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 SEC23AQ15436 765 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 FSCN1Q16658 493 aaKnown RBP10.59□□□□□ -0.71
HDAC6-232ENST00000489053 ARHGEF16Q5VV41 709 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 CREB3L3Q68CJ9 461 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 RGS22Q8NE09 1264 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 NSUN6Q8TEA1 469 aaKnown RBP10.59□□□□□ -0.71
HDAC6-232ENST00000489053 SCFD2Q8WU76 684 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 PIBF1Q8WXW3 757 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 RRP36Q96EU6 259 aaKnown RBP10.59□□□□□ -0.71
HDAC6-232ENST00000489053 TMEM87BQ96K49 555 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 FGD4Q96M96 766 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 LZTS2Q9BRK4 669 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 WDR11Q9BZH6 1224 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 MAF1Q9H063 256 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 LSG1Q9H089 658 aaKnown RBP10.59□□□□□ -0.71
HDAC6-232ENST00000489053 JMJD4Q9H9V9 463 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 TMEM39AQ9NV64 488 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 NAP1L2Q9ULW6 460 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-232ENST00000489053 SLC12A7Q9Y666 1083 aa10.59□□□□□ -0.71
HDAC6-232ENST00000489053 LAMA4Q16363 1823 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 A0A0U1RQG5 324 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-232ENST00000489053 ADAMTS4O75173 837 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 CABYRO75952 493 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 DDAH1O94760 285 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 ASGR1P07306 291 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 CLTBP09497 229 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 CPT1AP50416 773 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 TLE2Q04725 743 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 STXBP2Q15833 593 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 ZNF654Q8IZM8 581 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 STAG2Q8N3U4 1231 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 CLEC4DQ8WXI8 215 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 CUL5Q93034 780 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 PURBQ96QR8 312 aaKnown RBP10.58□□□□□ -0.72
HDAC6-232ENST00000489053 RMDN3Q96TC7 470 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 MAD2L2Q9UI95 211 aa10.58□□□□□ -0.72
HDAC6-232ENST00000489053 GCOM1H8Y6P7 765 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-232ENST00000489053 NKRFO15226 690 aaKnown RBP eCLIP10.57□□□□□ -0.72
HDAC6-232ENST00000489053 REC8O95072 547 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 POLR2MP0CAP2 368 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 TXNP10599 105 aaKnown RBP10.57□□□□□ -0.72
HDAC6-232ENST00000489053 RAG1P15918 1043 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 SMPD1P17405 629 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 CST5P28325 142 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-232ENST00000489053 BEX3Q00994 111 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 TTLL4Q14679 1199 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 STOX1Q6ZVD7 989 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 SKAP1Q86WV1 359 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 MB21D2Q8IYB1 491 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-232ENST00000489053 TDHQ8IZJ6 230 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 OR6J1Q8NGC5 347 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 NEK1Q96PY6 1258 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 PIGSQ96S52 555 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 MTA3Q9BTC8 594 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 UPF3AQ9H1J1 476 aaKnown RBP10.57□□□□□ -0.72
HDAC6-232ENST00000489053 PDGFCQ9NRA1 345 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 POLR3EQ9NVU0 708 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 ELP1O95163 1332 aa10.57□□□□□ -0.72
HDAC6-232ENST00000489053 PNMA6FA0A0J9YX94 578 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.56□□□□□ -0.72
HDAC6-232ENST00000489053 PALM3A6NDB9 673 aaPredicted RBP10.56□□□□□ -0.72
HDAC6-232ENST00000489053 MYADML2A6NDP7 307 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 SLC34A2O95436 690 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 MYL3P08590 195 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 HMGB1P09429 215 aaKnown RBP10.56□□□□□ -0.72
HDAC6-232ENST00000489053 EIF2AK2P19525 551 aaKnown RBP10.56□□□□□ -0.72
HDAC6-232ENST00000489053 BMP8BP34820 402 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 FXR1P51114 621 aaKnown RBP eCLIP10.56□□□□□ -0.72
HDAC6-232ENST00000489053 CHMP4BP1P59074 171 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 DUSP28Q4G0W2 176 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 C1orf53Q5VUE5 145 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 CXCL17Q6UXB2 119 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 SEPT14Q6ZU15 432 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 KLHDC9Q8NEP7 349 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 SYTL5Q8TDW5 730 aaPredicted RBP10.56□□□□□ -0.72
HDAC6-232ENST00000489053 IWS1Q96ST2 819 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 GDF15Q99988 308 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 SEZ6LQ9BYH1 1024 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 LY9Q9HBG7 655 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 MAP3K20Q9NYL2 800 aaKnown RBP10.56□□□□□ -0.72
HDAC6-232ENST00000489053 Q9Y3F1 56 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 TAF6LQ9Y6J9 622 aa10.56□□□□□ -0.72
HDAC6-232ENST00000489053 DDX49Q9Y6V7 483 aaKnown RBP10.56□□□□□ -0.72
HDAC6-232ENST00000489053 ARVCFO00192 962 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 SH2B2O14492 632 aaPredicted RBP10.55□□□□□ -0.72
HDAC6-232ENST00000489053 MYCLP12524 364 aaPredicted RBP10.55□□□□□ -0.72
HDAC6-232ENST00000489053 LIFRP42702 1097 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 ANTXR2P58335 489 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 TROAPQ12815 778 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 SNX17Q15036 470 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 FAM47CQ5HY64 1035 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 TAPT1Q6NXT6 567 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 FCHSD1Q86WN1 690 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 MICU3Q86XE3 530 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms