RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 TOX2Q96NM4 488 aa26.87■■□□□ 1.89
COL9A3-213ENST00000489045 AP5M1Q9H0R1 490 aa26.87■■□□□ 1.89
COL9A3-213ENST00000489045 TAF6LQ9Y6J9 622 aa26.87■■□□□ 1.89
COL9A3-213ENST00000489045 A0A0U1RQG5 324 aaPredicted RBP26.86■■□□□ 1.89
COL9A3-213ENST00000489045 DCDC2CA8MYV0 355 aa26.86■■□□□ 1.89
COL9A3-213ENST00000489045 KIAA0355O15063 1070 aa26.86■■□□□ 1.89
COL9A3-213ENST00000489045 DHX16O60231 1041 aaKnown RBP26.86■■□□□ 1.89
COL9A3-213ENST00000489045 ITGB8P26012 769 aa26.86■■□□□ 1.89
COL9A3-213ENST00000489045 FAAP100Q0VG06 881 aa26.86■■□□□ 1.89
COL9A3-213ENST00000489045 TMEM39AQ9NV64 488 aa26.86■■□□□ 1.89
COL9A3-213ENST00000489045 ABCB11O95342 1321 aa26.86■■□□□ 1.89
COL9A3-213ENST00000489045 DYNC1LI2O43237 492 aaPredicted RBP26.85■■□□□ 1.89
COL9A3-213ENST00000489045 FSCN1Q16658 493 aaKnown RBP26.85■■□□□ 1.89
COL9A3-213ENST00000489045 QRICH1Q2TAL8 776 aa26.85■■□□□ 1.89
COL9A3-213ENST00000489045 GPR153Q6NV75 609 aa26.85■■□□□ 1.89
COL9A3-213ENST00000489045 STAG2Q8N3U4 1231 aa26.85■■□□□ 1.89
COL9A3-213ENST00000489045 JMJD4Q9H9V9 463 aa26.85■■□□□ 1.89
COL9A3-213ENST00000489045 VAT1LQ9HCJ6 419 aa26.85■■□□□ 1.89
COL9A3-213ENST00000489045 MROH7Q68CQ1 1323 aa26.85■■□□□ 1.89
COL9A3-213ENST00000489045 E7EWF7 191 aa26.84■■□□□ 1.89
COL9A3-213ENST00000489045 RAG1P15918 1043 aa26.84■■□□□ 1.89
COL9A3-213ENST00000489045 CDK7P50613 346 aa26.84■■□□□ 1.89
COL9A3-213ENST00000489045 CXCL17Q6UXB2 119 aa26.84■■□□□ 1.89
COL9A3-213ENST00000489045 RALYLQ86SE5 291 aaKnown RBP26.84■■□□□ 1.89
COL9A3-213ENST00000489045 RGS22Q8NE09 1264 aa26.84■■□□□ 1.89
COL9A3-213ENST00000489045 DNERQ8NFT8 737 aa26.84■■□□□ 1.89
COL9A3-213ENST00000489045 Q9Y3F1 56 aa26.84■■□□□ 1.89
COL9A3-213ENST00000489045 ARVCFO00192 962 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 EDNRBP24530 442 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 PDE4DQ08499 809 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 SHHQ15465 462 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 DUSP28Q4G0W2 176 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 C9orf50Q5SZB4 431 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 STOX1Q6ZVD7 989 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 FBXO11Q86XK2 927 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 NCOA7Q8NI08 942 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 MAP4K1Q92918 833 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 MPHOSPH6Q99547 160 aaKnown RBP26.83■■□□□ 1.89
COL9A3-213ENST00000489045 WDR11Q9BZH6 1224 aa26.83■■□□□ 1.89
COL9A3-213ENST00000489045 IFIT3O14879 490 aaKnown RBP26.82■■□□□ 1.88
COL9A3-213ENST00000489045 TBC1D5Q92609 795 aa26.82■■□□□ 1.88
COL9A3-213ENST00000489045 MAD2L2Q9UI95 211 aa26.82■■□□□ 1.88
COL9A3-213ENST00000489045 RBM8AQ9Y5S9 174 aaKnown RBP26.82■■□□□ 1.88
COL9A3-213ENST00000489045 KIAA1217Q5T5P2 1943 aa26.81■■□□□ 1.88
COL9A3-213ENST00000489045 RBM47A0AV96 593 aaKnown RBP26.81■■□□□ 1.88
COL9A3-213ENST00000489045 KLRF2D3W0D1 207 aa26.81■■□□□ 1.88
COL9A3-213ENST00000489045 ZEB2O60315 1214 aa26.81■■□□□ 1.88
COL9A3-213ENST00000489045 Q7L0L9 218 aa26.81■■□□□ 1.88
COL9A3-213ENST00000489045 SENP2Q9HC62 589 aa26.81■■□□□ 1.88
COL9A3-213ENST00000489045 TBX21Q9UL17 535 aa26.81■■□□□ 1.88
COL9A3-213ENST00000489045 BAZ2BQ9UIF8 2168 aaKnown RBP26.8■■□□□ 1.88
COL9A3-213ENST00000489045 ERICH2A1L162 156 aa26.8■■□□□ 1.88
COL9A3-213ENST00000489045 CABYRO75952 493 aa26.8■■□□□ 1.88
COL9A3-213ENST00000489045 CHST3Q7LGC8 479 aa26.8■■□□□ 1.88
COL9A3-213ENST00000489045 FAM126BQ8IXS8 530 aa26.8■■□□□ 1.88
COL9A3-213ENST00000489045 DEFB123Q8N688 67 aa26.8■■□□□ 1.88
COL9A3-213ENST00000489045 MAF1Q9H063 256 aa26.8■■□□□ 1.88
COL9A3-213ENST00000489045 MRPL11Q9Y3B7 192 aaKnown RBP26.8■■□□□ 1.88
COL9A3-213ENST00000489045 LAMA2P24043 3122 aaKnown RBP26.8■■□□□ 1.88
COL9A3-213ENST00000489045 PALM3A6NDB9 673 aaPredicted RBP26.79■■□□□ 1.88
COL9A3-213ENST00000489045 B4DLN1 442 aa26.79■■□□□ 1.88
COL9A3-213ENST00000489045 MRPL12P52815 198 aaKnown RBP26.79■■□□□ 1.88
COL9A3-213ENST00000489045 GRM4Q14833 912 aa26.79■■□□□ 1.88
COL9A3-213ENST00000489045 WTAPQ15007 396 aa26.79■■□□□ 1.88
COL9A3-213ENST00000489045 MCF2L2Q86YR7 1114 aa26.79■■□□□ 1.88
COL9A3-213ENST00000489045 SYTL5Q8TDW5 730 aaPredicted RBP26.79■■□□□ 1.88
COL9A3-213ENST00000489045 COL20A1Q9P218 1284 aa26.79■■□□□ 1.88
COL9A3-213ENST00000489045 TLR3O15455 904 aaKnown RBP26.78■■□□□ 1.88
COL9A3-213ENST00000489045 TIMP1P01033 207 aa26.78■■□□□ 1.88
COL9A3-213ENST00000489045 EPHB4P54760 987 aa26.78■■□□□ 1.88
COL9A3-213ENST00000489045 ANTXR2P58335 489 aa26.78■■□□□ 1.88
COL9A3-213ENST00000489045 FPGSQ05932 587 aa26.78■■□□□ 1.88
COL9A3-213ENST00000489045 SART3Q15020 963 aaKnown RBP26.78■■□□□ 1.88
COL9A3-213ENST00000489045 CENPQQ7L2Z9 268 aaPredicted RBP26.78■■□□□ 1.88
COL9A3-213ENST00000489045 SKAP1Q86WV1 359 aa26.78■■□□□ 1.88
COL9A3-213ENST00000489045 MB21D2Q8IYB1 491 aaPredicted RBP26.78■■□□□ 1.88
COL9A3-213ENST00000489045 SLC43A3Q8NBI5 491 aa26.78■■□□□ 1.88
COL9A3-213ENST00000489045 TAAR1Q96RJ0 339 aa26.78■■□□□ 1.88
COL9A3-213ENST00000489045 AMNQ9BXJ7 453 aa26.78■■□□□ 1.88
COL9A3-213ENST00000489045 ITGA7Q13683 1181 aa26.77■■□□□ 1.88
COL9A3-213ENST00000489045 PPP2R5BQ15173 497 aa26.77■■□□□ 1.88
COL9A3-213ENST00000489045 OR6J1Q8NGC5 347 aa26.77■■□□□ 1.88
COL9A3-213ENST00000489045 SCFD2Q8WU76 684 aa26.77■■□□□ 1.88
COL9A3-213ENST00000489045 MTMR8Q96EF0 704 aa26.77■■□□□ 1.88
COL9A3-213ENST00000489045 ESYT1Q9BSJ8 1104 aa26.77■■□□□ 1.88
COL9A3-213ENST00000489045 LSG1Q9H089 658 aaKnown RBP26.77■■□□□ 1.88
COL9A3-213ENST00000489045 GRIN2DO15399 1336 aa26.76■■□□□ 1.87
COL9A3-213ENST00000489045 ZBTB5O15062 677 aa26.76■■□□□ 1.87
COL9A3-213ENST00000489045 PPP1R11O60927 126 aaPredicted RBP26.76■■□□□ 1.87
COL9A3-213ENST00000489045 SLC35G1Q2M3R5 365 aa26.76■■□□□ 1.87
COL9A3-213ENST00000489045 TMEM67Q5HYA8 995 aa26.76■■□□□ 1.87
COL9A3-213ENST00000489045 NKRFO15226 690 aaKnown RBP eCLIP26.75■■□□□ 1.87
COL9A3-213ENST00000489045 CFBP00751 764 aa26.75■■□□□ 1.87
COL9A3-213ENST00000489045 CD4P01730 458 aa26.75■■□□□ 1.87
COL9A3-213ENST00000489045 CPT1AP50416 773 aa26.75■■□□□ 1.87
COL9A3-213ENST00000489045 PSMC6P62333 389 aa26.75■■□□□ 1.87
COL9A3-213ENST00000489045 TROAPQ12815 778 aa26.75■■□□□ 1.87
COL9A3-213ENST00000489045 HOMER1Q86YM7 354 aa26.75■■□□□ 1.87
COL9A3-213ENST00000489045 NSUN6Q8TEA1 469 aaKnown RBP26.75■■□□□ 1.87
COL9A3-213ENST00000489045 RMDN3Q96TC7 470 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms