RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 MDM2Q00987 491 aaPredicted RBP13.79□□□□□ -0.2
HDAC6-230ENST00000488543 PICK1Q9NRD5 415 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 SERTAD1Q9UHV2 236 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 VWA3AA6NCI4 1184 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 USP27XA6NNY8 438 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 FOXN1O15353 648 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 ADCY7P51828 1080 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 PNOCQ13519 176 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 VGLL4Q14135 290 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 NONOQ15233 471 aaKnown RBP eCLIP13.78□□□□□ -0.2
HDAC6-230ENST00000488543 QRICH1Q2TAL8 776 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 PNMA8AQ86V59 439 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-230ENST00000488543 CNNM3Q8NE01 707 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 SYMPKQ92797 1274 aaKnown RBP13.78□□□□□ -0.2
HDAC6-230ENST00000488543 TMEM60Q9H2L4 133 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 NMRK2Q9NPI5 230 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 EMILIN3Q9NT22 766 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 BIN2Q9UBW5 565 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-230ENST00000488543 JAKMIP3Q5VZ66 844 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 ARL6IP4Q66PJ3 421 aaKnown RBP13.78□□□□□ -0.2
HDAC6-230ENST00000488543 REXO1Q8N1G1 1221 aaKnown RBP13.78□□□□□ -0.2
HDAC6-230ENST00000488543 KIFC2Q96AC6 838 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 CLMNQ96JQ2 1002 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 RIC8AQ9NPQ8 531 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 PRR12Q9ULL5 1215 aa13.78□□□□□ -0.2
HDAC6-230ENST00000488543 SPDYE4A6NLX3 237 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 EDIL3O43854 480 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 PPP1R12BO60237 982 aaPredicted RBP13.77□□□□□ -0.21
HDAC6-230ENST00000488543 NLRP12P59046 1061 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 CBX1P83916 185 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 CDC37Q16543 378 aaPredicted RBP13.77□□□□□ -0.21
HDAC6-230ENST00000488543 DPCR1Q3MIW9 517 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 SYDE2Q5VT97 1194 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 PPP4R3CPQ6ZMV5 832 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 KIAA1683Q9H0B3 1180 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 ZNF408Q9H9D4 720 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 SNCAIPQ9Y6H5 919 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 MYH7BA7E2Y1 1941 aa13.77□□□□□ -0.21
HDAC6-230ENST00000488543 CLK2P49760 499 aaKnown RBP13.76□□□□□ -0.21
HDAC6-230ENST00000488543 STAT2P52630 851 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 MAP3K9P80192 1104 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 TTLL12Q14166 644 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-230ENST00000488543 BTNL9Q6UXG8 535 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 PDILTQ8N807 584 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 ZNF280CQ8ND82 737 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 ZNF592Q92610 1267 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 MAP7D2Q96T17 732 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 SH2D4AQ9H788 454 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 BIN1O00499 593 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 PRR29P0C7W0 189 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 HMGCS2P54868 508 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 USH1GQ495M9 461 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 FILIP1Q7Z7B0 1213 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 DHX40Q8IX18 779 aaKnown RBP13.76□□□□□ -0.21
HDAC6-230ENST00000488543 AOPEPQ8N6M6 819 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 TBCKQ8TEA7 893 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 SCN4AP35499 1836 aa13.76□□□□□ -0.21
HDAC6-230ENST00000488543 GTF2F1P35269 517 aaKnown RBP eCLIP13.75□□□□□ -0.21
HDAC6-230ENST00000488543 BACE1P56817 501 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 UBE2SQ16763 222 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 ISM2Q6H9L7 571 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 NEK8Q86SG6 692 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 PCDHA1Q9Y5I3 950 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 SMCHD1A6NHR9 2005 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 GOLGA6L19H0YKK7 550 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 VCAM1P19320 739 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 SH3RF1Q7Z6J0 888 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 GRAMD1CQ8IYS0 662 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 CEP57L1Q8IYX8 460 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 DHX58Q96C10 678 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 PKNOX2Q96KN3 472 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 WDR18Q9BV38 432 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 ELP3Q9H9T3 547 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 GINM1Q9NU53 330 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 PCDHA5Q9Y5H7 936 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 WDR90Q96KV7 1748 aa13.75□□□□□ -0.21
HDAC6-230ENST00000488543 LONP1P36776 959 aaKnown RBP13.74□□□□□ -0.21
HDAC6-230ENST00000488543 POSTNQ15063 836 aa13.74□□□□□ -0.21
HDAC6-230ENST00000488543 E2F4Q16254 413 aa13.74□□□□□ -0.21
HDAC6-230ENST00000488543 LETM2Q2VYF4 491 aa13.74□□□□□ -0.21
HDAC6-230ENST00000488543 CCDC174Q6PII3 467 aa13.74□□□□□ -0.21
HDAC6-230ENST00000488543 AFG3L2Q9Y4W6 797 aa13.74□□□□□ -0.21
HDAC6-230ENST00000488543 LAD1O00515 517 aa13.74□□□□□ -0.21
HDAC6-230ENST00000488543 PRPHP41219 470 aa13.74□□□□□ -0.21
HDAC6-230ENST00000488543 NOL9Q5SY16 702 aaKnown RBP13.74□□□□□ -0.21
HDAC6-230ENST00000488543 CUL5Q93034 780 aa13.74□□□□□ -0.21
HDAC6-230ENST00000488543 BPIFA3Q9BQP9 254 aa13.74□□□□□ -0.21
HDAC6-230ENST00000488543 CCDC94Q9BW85 323 aaPredicted RBP13.74□□□□□ -0.21
HDAC6-230ENST00000488543 TANGO6Q9C0B7 1094 aa13.74□□□□□ -0.21
HDAC6-230ENST00000488543 TRMT1Q9NXH9 659 aaKnown RBP13.74□□□□□ -0.21
HDAC6-230ENST00000488543 CCNT1O60563 726 aaKnown RBP13.73□□□□□ -0.21
HDAC6-230ENST00000488543 TPM3P06753 285 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 SLFN14P0C7P3 912 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 TNNT1P13805 278 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 NF2P35240 595 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 IREB2P48200 963 aaKnown RBP13.73□□□□□ -0.21
HDAC6-230ENST00000488543 SARSP49591 514 aaKnown RBP13.73□□□□□ -0.21
HDAC6-230ENST00000488543 ORC2Q13416 577 aaPredicted RBP13.73□□□□□ -0.21
HDAC6-230ENST00000488543 TPD52L1Q16890 204 aaPredicted RBP13.73□□□□□ -0.21
HDAC6-230ENST00000488543 NT5DC1Q5TFE4 455 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms