RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 PDE4DQ08499 809 aa17.38■□□□□ 0.37
TRIM54-204ENST00000488321 TRAF1Q13077 416 aa17.38■□□□□ 0.37
TRIM54-204ENST00000488321 LRRC26Q2I0M4 334 aa17.38■□□□□ 0.37
TRIM54-204ENST00000488321 MTMR8Q96EF0 704 aa17.38■□□□□ 0.37
TRIM54-204ENST00000488321 JAKMIP1Q96N16 626 aaKnown RBP17.38■□□□□ 0.37
TRIM54-204ENST00000488321 MAP3K14Q99558 947 aa17.38■□□□□ 0.37
TRIM54-204ENST00000488321 SPC25Q9HBM1 224 aa17.38■□□□□ 0.37
TRIM54-204ENST00000488321 SYNRGQ9UMZ2 1314 aa17.38■□□□□ 0.37
TRIM54-204ENST00000488321 ADCY6O43306 1168 aa17.37■□□□□ 0.37
TRIM54-204ENST00000488321 ADAMTS4O75173 837 aa17.37■□□□□ 0.37
TRIM54-204ENST00000488321 C6orf222P0C671 652 aaPredicted RBP17.37■□□□□ 0.37
TRIM54-204ENST00000488321 GNAQP50148 359 aa17.37■□□□□ 0.37
TRIM54-204ENST00000488321 EXOSC10Q01780 885 aaKnown RBP17.37■□□□□ 0.37
TRIM54-204ENST00000488321 TNFAIP2Q03169 654 aa17.37■□□□□ 0.37
TRIM54-204ENST00000488321 MICU3Q86XE3 530 aa17.37■□□□□ 0.37
TRIM54-204ENST00000488321 DNERQ8NFT8 737 aa17.37■□□□□ 0.37
TRIM54-204ENST00000488321 SYTL5Q8TDW5 730 aaPredicted RBP17.37■□□□□ 0.37
TRIM54-204ENST00000488321 LZTS2Q9BRK4 669 aa17.37■□□□□ 0.37
TRIM54-204ENST00000488321 VTA1Q9NP79 307 aa17.37■□□□□ 0.37
TRIM54-204ENST00000488321 PDGFCQ9NRA1 345 aa17.37■□□□□ 0.37
TRIM54-204ENST00000488321 SNX14Q9Y5W7 946 aa17.37■□□□□ 0.37
TRIM54-204ENST00000488321 LOC102724159A0A0B4J2E5 919 aa17.36■□□□□ 0.37
TRIM54-204ENST00000488321 PNMA6FA0A0J9YX94 578 aa17.36■□□□□ 0.37
TRIM54-204ENST00000488321 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.36■□□□□ 0.37
TRIM54-204ENST00000488321 B4DLN1 442 aa17.36■□□□□ 0.37
TRIM54-204ENST00000488321 PLEKHA8P1O95397 391 aa17.36■□□□□ 0.37
TRIM54-204ENST00000488321 CPA1P15085 419 aa17.36■□□□□ 0.37
TRIM54-204ENST00000488321 MRPL12P52815 198 aaKnown RBP17.36■□□□□ 0.37
TRIM54-204ENST00000488321 PWP2Q15269 919 aaKnown RBP17.36■□□□□ 0.37
TRIM54-204ENST00000488321 SGMS1Q86VZ5 419 aa17.36■□□□□ 0.37
TRIM54-204ENST00000488321 CMTR1Q8N1G2 835 aaKnown RBP17.36■□□□□ 0.37
TRIM54-204ENST00000488321 MORC4Q8TE76 937 aa17.36■□□□□ 0.37
TRIM54-204ENST00000488321 RRP36Q96EU6 259 aaKnown RBP17.36■□□□□ 0.37
TRIM54-204ENST00000488321 SEC63Q9UGP8 760 aaKnown RBP17.36■□□□□ 0.37
TRIM54-204ENST00000488321 ZMYND8Q9ULU4 1186 aaPredicted RBP17.36■□□□□ 0.37
TRIM54-204ENST00000488321 NAP1L2Q9ULW6 460 aaPredicted RBP17.36■□□□□ 0.37
TRIM54-204ENST00000488321 TAPT1Q6NXT6 567 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 BLOC1S2Q6QNY1 142 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 CCDC82Q8N4S0 544 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 FANCBQ8NB91 859 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 KCNB2Q92953 911 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 TAAR1Q96RJ0 339 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 RMDN3Q96TC7 470 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 SPZ1Q9BXG8 430 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 MAF1Q9H063 256 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 COL20A1Q9P218 1284 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 PHF24Q9UPV7 400 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 ATP11BQ9Y2G3 1177 aa17.35■□□□□ 0.37
TRIM54-204ENST00000488321 MYADML2A6NDP7 307 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 SMPD1P17405 629 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 SYN1P17600 705 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 GJA9P57773 515 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 IRX5P78411 483 aaPredicted RBP17.34■□□□□ 0.37
TRIM54-204ENST00000488321 GNASQ5JWF2 1037 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 PDE4DIPQ5VU43 2346 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 ARHGEF16Q5VV41 709 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 IQSEC1Q6DN90 963 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 APOA5Q6Q788 366 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 CHRDL2Q6WN34 429 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 SLC39A5Q6ZMH5 540 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 SRBD1Q8N5C6 995 aaKnown RBP17.34■□□□□ 0.37
TRIM54-204ENST00000488321 NSUN6Q8TEA1 469 aaKnown RBP17.34■□□□□ 0.37
TRIM54-204ENST00000488321 AP5M1Q9H0R1 490 aa17.34■□□□□ 0.37
TRIM54-204ENST00000488321 KLF18A0A0U1RQI7 1052 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 A0A1W2PQ45 241 aaPredicted RBP17.33■□□□□ 0.36
TRIM54-204ENST00000488321 A0A1W2PQY0 241 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 GCOM1H8Y6P7 765 aaPredicted RBP17.33■□□□□ 0.36
TRIM54-204ENST00000488321 OPLAHO14841 1288 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 DYNC1LI2O43237 492 aaPredicted RBP17.33■□□□□ 0.36
TRIM54-204ENST00000488321 ZBTB43O43298 467 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 POLR2MP0CAP2 368 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 EIF2AK2P19525 551 aaKnown RBP17.33■□□□□ 0.36
TRIM54-204ENST00000488321 PTGS1P23219 599 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 EDNRBP24530 442 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 PSMA5P28066 241 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 SMARCA1P28370 1054 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 HOXA13P31271 388 aaPredicted RBP17.33■□□□□ 0.36
TRIM54-204ENST00000488321 ACLYP53396 1101 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 RTP1P59025 263 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 KCNA10Q16322 511 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 Q6ZUG5 572 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 TLK2Q86UE8 772 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 PCSK9Q8NBP7 692 aaKnown RBP17.33■□□□□ 0.36
TRIM54-204ENST00000488321 KLHDC9Q8NEP7 349 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 TSEN34Q9BSV6 310 aaKnown RBP17.33■□□□□ 0.36
TRIM54-204ENST00000488321 WDR11Q9BZH6 1224 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 BRPF3Q9ULD4 1205 aa17.33■□□□□ 0.36
TRIM54-204ENST00000488321 MOXD2PA6NHM9 499 aa17.32■□□□□ 0.36
TRIM54-204ENST00000488321 GOLGA8AA7E2F4 631 aa17.32■□□□□ 0.36
TRIM54-204ENST00000488321 GOLGA8BA8MQT2 603 aa17.32■□□□□ 0.36
TRIM54-204ENST00000488321 EPB41L2O43491 1005 aaKnown RBP17.32■□□□□ 0.36
TRIM54-204ENST00000488321 CASTP20810 708 aaKnown RBP17.32■□□□□ 0.36
TRIM54-204ENST00000488321 HSD17B4P51659 736 aa17.32■□□□□ 0.36
TRIM54-204ENST00000488321 BEX3Q00994 111 aa17.32■□□□□ 0.36
TRIM54-204ENST00000488321 RTN1Q16799 776 aa17.32■□□□□ 0.36
TRIM54-204ENST00000488321 TMEM63BQ5T3F8 832 aa17.32■□□□□ 0.36
TRIM54-204ENST00000488321 TMTC3Q6ZXV5 915 aa17.32■□□□□ 0.36
TRIM54-204ENST00000488321 VTI1AQ96AJ9 217 aa17.32■□□□□ 0.36
TRIM54-204ENST00000488321 UPF3AQ9H1J1 476 aaKnown RBP17.32■□□□□ 0.36
TRIM54-204ENST00000488321 STARD7Q9NQZ5 370 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms