RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 BIRC3Q13489 604 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 RETREG2Q8NC44 543 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 PARD3BQ8TEW8 1205 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 MS4A14Q96JA4 679 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS13D-209ENST00000487188 KRT23Q9C075 422 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 SH2D4AQ9H788 454 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 FAM207AQ9NSI2 230 aaPredicted RBP6.89□□□□□ -1.31
VPS13D-209ENST00000487188 DENND2AQ9ULE3 1009 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 TLDC2A0PJX2 215 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 ZSCAN5CA6NGD5 496 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 EIF4E1BA6NMX2 242 aaKnown RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 MCM7P33993 719 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 EIF4A3P38919 411 aaKnown RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 ATP11AP98196 1134 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 ITIH3Q06033 890 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 C3orf20Q8ND61 904 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 OR2W6PQ8NHA6 318 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 TAF1DQ9H5J8 278 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 CNNM2Q9H8M5 875 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 GPR108Q9NPR9 543 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 LEMD3Q9Y2U8 911 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 C15orf41Q9Y2V0 281 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 ZBTB12Q9Y330 459 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 LRRC37A3O60309 1634 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 FMN2Q9NZ56 1722 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 hCG_1642624A0A1W2PR95 340 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 BICDL2A1A5D9 508 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 DNM1LO00429 736 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 SMIM24O75264 130 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 TRIM37O94972 964 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 ANP32DO95626 131 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 PCK1P35558 622 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 PRCPP42785 496 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 ELF3P78545 371 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 MXRA7P84157 204 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 RASSF7Q02833 373 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 CTDSPL2Q05D32 466 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 LMNTD2Q8IXW0 634 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 CNOT6LQ96LI5 555 aaKnown RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 PLIN2Q99541 437 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 TSC22D3Q99576 134 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 OSBPL7Q9BZF2 842 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 NACAP1Q9BZK3 213 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 NUCKS1Q9H1E3 243 aaKnown RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 CWC25Q9NXE8 425 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 RNF14Q9UBS8 474 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 A0A087X0B3 334 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 FAM205CA6NFA0 338 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 FTCDO95954 541 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 GLI1P08151 1106 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 CDC25CP30307 473 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 ADORA1P30542 326 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 MAGOHP61326 146 aaKnown RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 ICA1Q05084 483 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 ITGB3BPQ13352 177 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 TAF11Q15544 211 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 FAM43BQ6ZT52 329 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 RRAGAQ7L523 313 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 SPATA20Q8TB22 786 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 ZNF483Q8TF39 744 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 MAGOHBQ96A72 148 aaKnown RBP6.88□□□□□ -1.31
VPS13D-209ENST00000487188 IFT74Q96LB3 600 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 THAP9Q9H5L6 903 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 LY9Q9HBG7 655 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 TMBIM4Q9HC24 238 aa6.88□□□□□ -1.31
VPS13D-209ENST00000487188 CFAP73A6NFT4 308 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 SRRM3A6NNA2 597 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-209ENST00000487188 DNAJC8O75937 253 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-209ENST00000487188 UBA7P41226 1012 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 NLRP5P59047 1200 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 TRAF1Q13077 416 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 PTGDRQ13258 359 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 GNPTABQ3T906 1256 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 METTL24Q5JXM2 366 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 SLC30A9Q6PML9 568 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 FBF1Q8TES7 1133 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 CASKIN2Q8WXE0 1202 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 RAPGEF5Q92565 580 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 CHMP6Q96FZ7 201 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 L3MBTL1Q9Y468 752 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 SLC4A4Q9Y6R1 1079 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 LRRD1A4D1F6 860 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 KLHL33A6NCF5 533 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 CCT8L1PA6NM43 557 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 TNFRSF8P28908 595 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 KLK7P49862 253 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 XRCC4Q13426 336 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 QPCTQ16769 361 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 PDS5AQ29RF7 1337 aaKnown RBP6.87□□□□□ -1.31
VPS13D-209ENST00000487188 WDR59Q6PJI9 974 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 LRIG3Q6UXM1 1119 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 BZW1Q7L1Q6 419 aaKnown RBP6.87□□□□□ -1.31
VPS13D-209ENST00000487188 HOOK3Q86VS8 718 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 IQCKQ8N0W5 287 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 IP6K1Q92551 441 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 CNOT10Q9H9A5 744 aaKnown RBP6.87□□□□□ -1.31
VPS13D-209ENST00000487188 TECPR2O15040 1411 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 XDHP47989 1333 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 EME2A4GXA9 379 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms