RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CYP46A1Q9Y6A2 500 aa17.11■□□□□ 0.33
USP4-212ENST00000486549 SYNGAP1Q96PV0 1343 aa17.11■□□□□ 0.33
USP4-212ENST00000486549 PNMA6FA0A0J9YX94 578 aa17.1■□□□□ 0.33
USP4-212ENST00000486549 MSCO60682 206 aa17.1■□□□□ 0.33
USP4-212ENST00000486549 SLC34A2O95436 690 aa17.1■□□□□ 0.33
USP4-212ENST00000486549 SNAI1O95863 264 aaPredicted RBP17.1■□□□□ 0.33
USP4-212ENST00000486549 MAMDC4Q6UXC1 1216 aa17.1■□□□□ 0.33
USP4-212ENST00000486549 TBC1D5Q92609 795 aa17.1■□□□□ 0.33
USP4-212ENST00000486549 SEC63Q9UGP8 760 aaKnown RBP17.1■□□□□ 0.33
USP4-212ENST00000486549 GTF3C3Q9Y5Q9 886 aa17.1■□□□□ 0.33
USP4-212ENST00000486549 ASTN1O14525 1302 aa17.1■□□□□ 0.33
USP4-212ENST00000486549 hCG_1642624A0A1W2PR95 340 aa17.09■□□□□ 0.33
USP4-212ENST00000486549 ASB14A6NK59 587 aa17.09■□□□□ 0.33
USP4-212ENST00000486549 SEPT4O43236 478 aa17.09■□□□□ 0.33
USP4-212ENST00000486549 C8orf34Q49A92 452 aa17.09■□□□□ 0.33
USP4-212ENST00000486549 LHX8Q68G74 356 aa17.09■□□□□ 0.33
USP4-212ENST00000486549 MCF2L2Q86YR7 1114 aa17.09■□□□□ 0.33
USP4-212ENST00000486549 RBM28Q9NW13 759 aaKnown RBP17.09■□□□□ 0.33
USP4-212ENST00000486549 ADD3Q9UEY8 706 aaKnown RBP17.09■□□□□ 0.33
USP4-212ENST00000486549 NRBP1Q9UHY1 535 aa17.09■□□□□ 0.33
USP4-212ENST00000486549 OGDHLQ9ULD0 1010 aa17.09■□□□□ 0.33
USP4-212ENST00000486549 CFBP00751 764 aa17.08■□□□□ 0.32
USP4-212ENST00000486549 ZNF865P0CJ78 1059 aaPredicted RBP17.08■□□□□ 0.32
USP4-212ENST00000486549 SMARCA1P28370 1054 aa17.08■□□□□ 0.32
USP4-212ENST00000486549 METAP2P50579 478 aaKnown RBP eCLIP17.08■□□□□ 0.32
USP4-212ENST00000486549 ALDH5A1P51649 535 aaPredicted RBP17.08■□□□□ 0.32
USP4-212ENST00000486549 DIS3LQ8TF46 1054 aaKnown RBP17.08■□□□□ 0.32
USP4-212ENST00000486549 LENG1Q96BZ8 264 aaPredicted RBP17.08■□□□□ 0.32
USP4-212ENST00000486549 TM6SF1Q9BZW5 370 aa17.08■□□□□ 0.32
USP4-212ENST00000486549 CNTNAP5Q8WYK1 1306 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 H0YGN5 161 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 EVI5O60447 810 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 MYCNP04198 464 aaPredicted RBP17.07■□□□□ 0.32
USP4-212ENST00000486549 AKR1A1P14550 325 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 TRAF1Q13077 416 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 ACVR2BQ13705 512 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 EEPD1Q7L9B9 569 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 RGS22Q8NE09 1264 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 LARP6Q9BRS8 491 aaKnown RBP17.07■□□□□ 0.32
USP4-212ENST00000486549 AGXT2Q9BYV1 514 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 ABHD16BQ9H3Z7 469 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 PDRG1Q9NUG6 133 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 COL20A1Q9P218 1284 aa17.07■□□□□ 0.32
USP4-212ENST00000486549 OPLAHO14841 1288 aa17.06■□□□□ 0.32
USP4-212ENST00000486549 RARBP10826 455 aa17.06■□□□□ 0.32
USP4-212ENST00000486549 CDC27P30260 824 aa17.06■□□□□ 0.32
USP4-212ENST00000486549 ANAPC15P60006 121 aa17.06■□□□□ 0.32
USP4-212ENST00000486549 TOB2Q14106 344 aaPredicted RBP17.06■□□□□ 0.32
USP4-212ENST00000486549 FBXO16Q8IX29 292 aaPredicted RBP17.06■□□□□ 0.32
USP4-212ENST00000486549 FBXL16Q8N461 479 aa17.06■□□□□ 0.32
USP4-212ENST00000486549 SYTL5Q8TDW5 730 aaPredicted RBP17.06■□□□□ 0.32
USP4-212ENST00000486549 PAWRQ96IZ0 340 aaKnown RBP17.06■□□□□ 0.32
USP4-212ENST00000486549 HOXA13P31271 388 aaPredicted RBP17.05■□□□□ 0.32
USP4-212ENST00000486549 ADD1P35611 737 aaKnown RBP17.05■□□□□ 0.32
USP4-212ENST00000486549 RCAN1P53805 252 aa17.05■□□□□ 0.32
USP4-212ENST00000486549 PDE4DQ08499 809 aa17.05■□□□□ 0.32
USP4-212ENST00000486549 CCDC144BQ3MJ40 725 aa17.05■□□□□ 0.32
USP4-212ENST00000486549 HABP4Q5JVS0 413 aaKnown RBP17.05■□□□□ 0.32
USP4-212ENST00000486549 TAAR1Q96RJ0 339 aa17.05■□□□□ 0.32
USP4-212ENST00000486549 MPHOSPH6Q99547 160 aaKnown RBP17.05■□□□□ 0.32
USP4-212ENST00000486549 KATNBL1Q9H079 304 aa17.05■□□□□ 0.32
USP4-212ENST00000486549 C11orf49Q9H6J7 331 aa17.05■□□□□ 0.32
USP4-212ENST00000486549 FAM217BQ9NTX9 383 aaPredicted RBP17.05■□□□□ 0.32
USP4-212ENST00000486549 FAM184BQ9ULE4 1060 aa17.05■□□□□ 0.32
USP4-212ENST00000486549 MNX1P50219 401 aaPredicted RBP17.04■□□□□ 0.32
USP4-212ENST00000486549 HSD17B4P51659 736 aa17.04■□□□□ 0.32
USP4-212ENST00000486549 CCT2P78371 535 aaKnown RBP17.04■□□□□ 0.32
USP4-212ENST00000486549 GJC2Q5T442 439 aaPredicted RBP17.04■□□□□ 0.32
USP4-212ENST00000486549 HEATR3Q7Z4Q2 680 aa17.04■□□□□ 0.32
USP4-212ENST00000486549 DNERQ8NFT8 737 aa17.04■□□□□ 0.32
USP4-212ENST00000486549 GPKOWQ92917 476 aaPredicted RBP eCLIP17.04■□□□□ 0.32
USP4-212ENST00000486549 RMDN3Q96TC7 470 aa17.04■□□□□ 0.32
USP4-212ENST00000486549 XPNPEP3Q9NQH7 507 aa17.04■□□□□ 0.32
USP4-212ENST00000486549 CCDC196A0A1B0GTZ2 297 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.03■□□□□ 0.32
USP4-212ENST00000486549 B4DLN1 442 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 GCOM1H8Y6P7 765 aaPredicted RBP17.03■□□□□ 0.32
USP4-212ENST00000486549 ADCY6O43306 1168 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 PGK1P00558 417 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 POLR2MP0CAP2 368 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 EIF2AK2P19525 551 aaKnown RBP17.03■□□□□ 0.32
USP4-212ENST00000486549 PDIA3P30101 505 aaKnown RBP17.03■□□□□ 0.32
USP4-212ENST00000486549 ADCYAP1R1P41586 468 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 MRPL12P52815 198 aaKnown RBP17.03■□□□□ 0.32
USP4-212ENST00000486549 FUT2Q10981 343 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 STK3Q13188 491 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 ARHGEF16Q5VV41 709 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 NOL8Q76FK4 1167 aaKnown RBP17.03■□□□□ 0.32
USP4-212ENST00000486549 MORC4Q8TE76 937 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 NSUN6Q8TEA1 469 aaKnown RBP17.03■□□□□ 0.32
USP4-212ENST00000486549 MAF1Q9H063 256 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 NCOA5Q9HCD5 579 aaKnown RBP17.03■□□□□ 0.32
USP4-212ENST00000486549 VTA1Q9NP79 307 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 PDGFCQ9NRA1 345 aa17.03■□□□□ 0.32
USP4-212ENST00000486549 V9GY48 417 aaPredicted RBP17.03■□□□□ 0.32
USP4-212ENST00000486549 NID2Q14112 1375 aa17.02■□□□□ 0.32
USP4-212ENST00000486549 LOC102724159A0A0B4J2E5 919 aa17.02■□□□□ 0.32
USP4-212ENST00000486549 PPFIA3O75145 1194 aa17.02■□□□□ 0.32
USP4-212ENST00000486549 GHRHRQ02643 423 aa17.02■□□□□ 0.32
USP4-212ENST00000486549 PPP2R5BQ15173 497 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms