RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, human

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM39A-208	ENST00000486159	SLC3A2	P08195	630 aa	Known RBP	11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ACR	P10323	421 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	HSPD1	P10809	573 aa	Known RBP	11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	SMPD1	P17405	629 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CDK7	P50613	346 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	OAZ1	P54368	228 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	GJA9	P57773	515 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CCDC96	Q2M329	555 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	GNAS	Q5JWF2	1037 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ANKRD33	Q7Z3H0	272 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TBC1D10C	Q8IV04	446 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	FBXO16	Q8IX29	292 aa	Predicted RBP	11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	MSL3	Q8N5Y2	521 aa	Known RBP	11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CHURC1	Q8WUH1	139 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	MYLIP	Q8WY64	445 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	VTI1A	Q96AJ9	217 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ZKSCAN3	Q9BRR0	538 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TSEN34	Q9BSV6	310 aa	Known RBP	11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	UPF3A	Q9H1J1	476 aa	Known RBP	11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ABHD16B	Q9H3Z7	469 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TOMM22	Q9NS69	142 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	GRIN2D	O15399	1336 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	UMODL1	Q5DID0	1318 aa		11	□□□□□ -0.65
TMEM39A-208	ENST00000486159	GRXCR1	A8MXD5	290 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	NFIB	O00712	420 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	DYNC1LI2	O43237	492 aa	Predicted RBP	10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	FGR	P09769	529 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	PSMC6	P62333	389 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ALX1	Q15699	326 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	MCMDC2	Q4G0Z9	681 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ZNF697	Q5TEC3	545 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TAPT1	Q6NXT6	567 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CXCL17	Q6UXB2	119 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	NSMF	Q6X4W1	530 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	NOL8	Q76FK4	1167 aa	Known RBP	10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	FAM160B2	Q86V87	743 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	RNPC3	Q96LT9	517 aa	Known RBP	10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.99	□□□□□ -0.65	5e-8	■■■□□ 18.4
TMEM39A-208	ENST00000486159	PPP1R12C	Q9BZL4	782 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	HELLS	Q9NRZ9	838 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CYP39A1	Q9NYL5	469 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	FBXO40	Q9UH90	709 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TBX21	Q9UL17	535 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	SYNPO2	Q9UMS6	1093 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	GNE	Q9Y223	722 aa	Known RBP	10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	PCDHB13	Q9Y5F0	798 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CDH23	Q9H251	3354 aa		10.99	□□□□□ -0.65
TMEM39A-208	ENST00000486159	MOXD2P	A6NHM9	499 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	DCDC2C	A8MYV0	355 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159		K7ELQ4	463 aa	Predicted RBP	10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ARVCF	O00192	962 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ORC4	O43929	436 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	PLA2G6	O60733	806 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TIMP1	P01033	207 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CSF2RA	P15509	400 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CST5	P28325	142 aa	Predicted RBP	10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CYP2C18	P33260	490 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	PBX2	P40425	430 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TNFAIP2	Q03169	654 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	BAAT	Q14032	418 aa	Predicted RBP	10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	FAM126B	Q8IXS8	530 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	NUP133	Q8WUM0	1156 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	RNF25	Q96BH1	459 aa	Predicted RBP	10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	GLT1D1	Q96MS3	346 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TOX2	Q96NM4	488 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	RANBP17	Q9H2T7	1088 aa	Known RBP	10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ANO2	Q9NQ90	1003 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CCPG1	Q9ULG6	757 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	PRUNE2	Q8WUY3	3088 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	NEDD4	P46934	1319 aa		10.98	□□□□□ -0.65
TMEM39A-208	ENST00000486159	GOLGA8H	P0CJ92	632 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	PDHB	P11177	359 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	HSPA4	P34932	840 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	FPGS	Q05932	587 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	GRIN2C	Q14957	1233 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TMEM240	Q5SV17	173 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	SYDE2	Q5VT97	1194 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	SLC30A10	Q6XR72	485 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TLK2	Q86UE8	772 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CLEC4D	Q8WXI8	215 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TBC1D5	Q92609	795 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	UBA5	Q9GZZ9	404 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	TRPV6	Q9H1D0	765 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	IL25	Q9H293	177 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	VCAN	P13611	3396 aa		10.97	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ELP1	O95163	1332 aa		10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CCDC171	Q6TFL3	1326 aa		10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159		A0A0U1RQG5	324 aa	Predicted RBP	10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	CD4	P01730	458 aa		10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ICAM1	P05362	532 aa		10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	FDX1	P10109	184 aa		10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	SMAD3	P84022	425 aa	Known RBP	10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	FSCN1	Q16658	493 aa	Known RBP	10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	MFSD5	Q6N075	450 aa		10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	BTNL9	Q6UXG8	535 aa		10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	ZNF365	Q70YC5	407 aa		10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	USP38	Q8NB14	1042 aa		10.96	□□□□□ -0.65
TMEM39A-208	ENST00000486159	PCSK9	Q8NBP7	692 aa	Known RBP	10.96	□□□□□ -0.65

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