RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PROX2Q3B8N5 592 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 CPLX2Q6PUV4 134 aaKnown RBP9.32□□□□□ -0.92
USP40-216ENST00000485943 DHX32Q7L7V1 743 aaKnown RBP9.32□□□□□ -0.92
USP40-216ENST00000485943 MICU3Q86XE3 530 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 FBXO11Q86XK2 927 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 MCF2L2Q86YR7 1114 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 ZNF654Q8IZM8 581 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 KCNK17Q96T54 332 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 LZTS2Q9BRK4 669 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 MTA3Q9BTC8 594 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 LRRC2Q9BYS8 371 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 NBPF3Q9H094 633 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 SPC25Q9HBM1 224 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 SLC38A10Q9HBR0 1119 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 ADD3Q9UEY8 706 aaKnown RBP9.32□□□□□ -0.92
USP40-216ENST00000485943 MRPL11Q9Y3B7 192 aaKnown RBP9.32□□□□□ -0.92
USP40-216ENST00000485943 ZNFX1Q9P2E3 1918 aaKnown RBP9.31□□□□□ -0.92
USP40-216ENST00000485943 GOLGA8AA7E2F4 631 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 GOLGA8BA8MQT2 603 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 CPLX1O14810 134 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 ZBTB43O43298 467 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 MSCO60682 206 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 CNMDO75829 334 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 ICAM1P05362 532 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 XRCC5P13010 732 aaKnown RBP9.31□□□□□ -0.92
USP40-216ENST00000485943 CALML3P27482 149 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 GRB14Q14449 540 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 NECTIN1Q15223 517 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 MYSM1Q5VVJ2 828 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 TTBK2Q6IQ55 1244 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 CCDC144CPQ8IYA2 1237 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 ABRAQ8N0Z2 381 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 TATDN2Q93075 761 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 AGBL1Q96MI9 1066 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 AMNQ9BXJ7 453 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 RBM28Q9NW13 759 aaKnown RBP9.31□□□□□ -0.92
USP40-216ENST00000485943 ZHX1Q9UKY1 873 aaPredicted RBP9.31□□□□□ -0.92
USP40-216ENST00000485943 ABCB11O95342 1321 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 RPTORQ8N122 1335 aa9.31□□□□□ -0.92
USP40-216ENST00000485943 KLF18A0A0U1RQI7 1052 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 ASB14A6NK59 587 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 EPB41L2O43491 1005 aaKnown RBP9.3□□□□□ -0.92
USP40-216ENST00000485943 PGK2P07205 417 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 HSPA4P34932 840 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 LIFRP42702 1097 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 METAP2P50579 478 aaKnown RBP eCLIP9.3□□□□□ -0.92
USP40-216ENST00000485943 MLLT1Q03111 559 aaPredicted RBP9.3□□□□□ -0.92
USP40-216ENST00000485943 RTN1Q16799 776 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 RNF207Q6ZRF8 634 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 Q6ZUG5 572 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 MB21D2Q8IYB1 491 aaPredicted RBP9.3□□□□□ -0.92
USP40-216ENST00000485943 ADGRF4Q8IZF3 695 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 CCDC82Q8N4S0 544 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 ARMC5Q96C12 935 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 ZNF333Q96JL9 665 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 TCEANC2Q96MN5 208 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 DEFB118Q96PH6 123 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 MYL10Q9BUA6 226 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.3□□□□□ -0.92
USP40-216ENST00000485943 EHMT1Q9H9B1 1298 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 ZNF214Q9UL59 606 aaPredicted RBP9.3□□□□□ -0.92
USP40-216ENST00000485943 PARP14Q460N5 1801 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 PLXNA1Q9UIW2 1896 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 WDR19Q8NEZ3 1342 aa9.3□□□□□ -0.92
USP40-216ENST00000485943 KBTBD13C9JR72 458 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 SH2B2O14492 632 aaPredicted RBP9.29□□□□□ -0.92
USP40-216ENST00000485943 ATP2A1O14983 1001 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 CFBP00751 764 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 RARBP10826 455 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 CD46P15529 392 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 CAPN2P17655 700 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 RXRAP19793 462 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 CTGFP29279 349 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 GRM4Q14833 912 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 ANKRD1Q15327 319 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 MORN1Q5T089 497 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 POTEEQ6S8J3 1075 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 STOX1Q6ZVD7 989 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 RAB11FIP4Q86YS3 637 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 TRIM22Q8IYM9 498 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 SMARCC2Q8TAQ2 1214 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 TRIB2Q92519 343 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 ANKS1AQ92625 1134 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 VTI1AQ96AJ9 217 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 ZBED2Q9BTP6 218 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 HTATIP2Q9BUP3 242 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 UNC93B1Q9H1C4 597 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 RANBP17Q9H2T7 1088 aaKnown RBP9.29□□□□□ -0.92
USP40-216ENST00000485943 TMEM134Q9H6X4 195 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 ADAMTS5Q9UNA0 930 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 PCDHA1Q9Y5I3 950 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 SNX14Q9Y5W7 946 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 TACC3Q9Y6A5 838 aa9.29□□□□□ -0.92
USP40-216ENST00000485943 A0A0G2JMZ2 1700 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 ZBTB5O15062 677 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 DNAJB2P25686 324 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 CYP2C19P33261 490 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 PPP2R5BQ15173 497 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 MTFR1Q15390 333 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 SEC23AQ15436 765 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms