RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 SEZ6LQ9BYH1 1024 aa16.38■□□□□ 0.21
SQSTM1-208ENST00000485412 TRPV6Q9H1D0 765 aa16.38■□□□□ 0.21
SQSTM1-208ENST00000485412 B4GALT4O60513 344 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 PSMC6P62333 389 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 SKIV2LQ15477 1246 aaKnown RBP16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 CCDC96Q2M329 555 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 TKFCQ3LXA3 575 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 ANKRD45Q5TZF3 282 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 NSMFQ6X4W1 530 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 CRBNQ96SW2 442 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 ANAPC4Q9UJX5 808 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 CCPG1Q9ULG6 757 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 PCDHA11Q9Y5I1 949 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 LAMA4Q16363 1823 aa16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 FRMPD2Q68DX3 1309 aaPredicted RBP16.37■□□□□ 0.21
SQSTM1-208ENST00000485412 RBAK-RBAKDNI3L0D1 243 aa16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 NFIBO00712 420 aa16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 PLA2G6O60733 806 aa16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 MYOGP15173 224 aa16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 PLA2G5P39877 138 aa16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 AAK1Q2M2I8 961 aa16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 ZNF589Q86UQ0 364 aaPredicted RBP16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 FAM122AQ96E09 287 aa16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 SCLYQ96I15 445 aa16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 NECAB3Q96P71 396 aaPredicted RBP16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 WNT8AQ9H1J5 351 aa16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 RANBP17Q9H2T7 1088 aaKnown RBP16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 BDP1A6H8Y1 2624 aa16.36■□□□□ 0.21
SQSTM1-208ENST00000485412 ORC4O43929 436 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 FGRP09769 529 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 ATP2A2P16615 1042 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 PDE1AP54750 535 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 RRP1P56182 461 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 HAND2P61296 217 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 RRP12Q5JTH9 1297 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 IQSEC1Q6DN90 963 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 SLC30A10Q6XR72 485 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 PPP1R13LQ8WUF5 828 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 VWCEQ96DN2 955 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 TMEM47Q9BQJ4 181 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 GPCPD1Q9NPB8 672 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 XIRP2A4UGR9 3374 aa16.35■□□□□ 0.21
SQSTM1-208ENST00000485412 GTPBP6O43824 516 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 FGAP02671 866 aa16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 ICAM1P05362 532 aa16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 TFF2Q03403 129 aa16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 BAATQ14032 418 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 DCAF4Q8WV16 495 aa16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 EVI5LQ96CN4 794 aa16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 C1QTNF1Q9BXJ1 281 aa16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 TOMM22Q9NS69 142 aa16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 Q9Y3F1 56 aa16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 MYH6P13533 1939 aa16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 SCN10AQ9Y5Y9 1956 aa16.34■□□□□ 0.21
SQSTM1-208ENST00000485412 PFKMP08237 780 aa16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 NMIQ13287 307 aaPredicted RBP16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 ALX1Q15699 326 aa16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 TMEM67Q5HYA8 995 aa16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 SYDE2Q5VT97 1194 aa16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 KIAA1211Q6ZU35 1233 aa16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 TBC1D10CQ8IV04 446 aa16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 MORC4Q8TE76 937 aa16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 CLEC4DQ8WXI8 215 aa16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 ALDH8A1Q9H2A2 487 aaPredicted RBP16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 VTA1Q9NP79 307 aa16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 TANC1Q9C0D5 1861 aa16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 PRRC2BQ5JSZ5 2229 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-208ENST00000485412 SUPT20HL2P0C7V6 817 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 HSPD1P10809 573 aaKnown RBP16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 PDHBP11177 359 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 ACTN1P12814 892 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 BMP1P13497 986 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 ALDH5A1P51649 535 aaPredicted RBP16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 PTPRSQ13332 1948 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 TTLL4Q14679 1199 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 PPP4R3BQ5MIZ7 849 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 BTNL9Q6UXG8 535 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 DEFB128Q7Z7B8 93 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 TET1Q8NFU7 2136 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 CPVLQ9H3G5 476 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 HELLSQ9NRZ9 838 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 POLR3EQ9NVU0 708 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 TRANK1O15050 2925 aa16.32■□□□□ 0.2
SQSTM1-208ENST00000485412 TRIP12Q14669 1992 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 TNKSO95271 1327 aa16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 NEDD4P46934 1319 aa16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 CA3P07451 260 aa16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 MYL3P08590 195 aa16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 TOP1P11387 765 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 CYP2C9P11712 490 aa16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 KCNQ1P51787 676 aa16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 CERS4Q9HA82 394 aa16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 TRMT13Q9NUP7 481 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 KIAA1217Q5T5P2 1943 aa16.31■□□□□ 0.2
SQSTM1-208ENST00000485412 PTPDC1A2A3K4 754 aa16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 RFXAPO00287 272 aa16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 CALML3P27482 149 aa16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 DUSP28Q4G0W2 176 aa16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 MCMDC2Q4G0Z9 681 aa16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 FAM47CQ5HY64 1035 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms