RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 CDKAL1Q5VV42 579 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 CWF19L1Q69YN2 538 aaKnown RBP5.18□□□□□ -1.58
VPS41-212ENST00000482217 TMPRSS7Q7RTY8 843 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 FERMT3Q86UX7 667 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 ZNF227Q86WZ6 799 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 TRIM59Q8IWR1 403 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 PDILTQ8N807 584 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 ADCY4Q8NFM4 1077 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 SH3TC2Q8TF17 1288 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 PPP1R14AQ96A00 147 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 MRGPRX3Q96LB0 322 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 HSPA12BQ96MM6 686 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 SLC26A8Q96RN1 970 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.18□□□□□ -1.58
VPS41-212ENST00000482217 NOL6Q9H6R4 1146 aaKnown RBP5.18□□□□□ -1.58
VPS41-212ENST00000482217 SEMA3GQ9NS98 782 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 TYW1Q9NV66 732 aaKnown RBP5.18□□□□□ -1.58
VPS41-212ENST00000482217 PFDN2Q9UHV9 154 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 SCINQ9Y6U3 715 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 PITPNM2Q9BZ72 1349 aa5.18□□□□□ -1.58
VPS41-212ENST00000482217 GOLGA6CA6NDK9 693 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 GOLGA6BA6NDN3 693 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 H3BS24 57 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 NRDCO43847 1150 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 ADCY3O60266 1144 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 CAPNS1P04632 268 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 LDHCP07864 332 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 GOLGA6DP0CG33 693 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 JUNBP17275 347 aaPredicted RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 FUT4P22083 530 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 TPP2P29144 1249 aaPredicted RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 PPP2R2AP63151 447 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 POU4F1Q01851 419 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 POU5F1Q01860 360 aaKnown RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 AOC3Q16853 763 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 GAB4Q2WGN9 574 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 C10orf62Q5T681 223 aaPredicted RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 ANGEL2Q5VTE6 544 aaKnown RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 CCSAPQ6IQ19 270 aaPredicted RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 WFDC3Q8IUB2 231 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 TTC30BQ8N4P2 665 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 ZBTB38Q8NAP3 1195 aaPredicted RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.17□□□□□ -1.58
VPS41-212ENST00000482217 ZSWIM2Q8NEG5 633 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 CCDC140Q96MF4 163 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 FMNL2Q96PY5 1086 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 NAP1L4Q99733 375 aaKnown RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 AARSD1Q9BTE6 412 aaKnown RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 FAM126AQ9BYI3 521 aaPredicted RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 GOLGA6AQ9NYA3 693 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 ZSWIM5Q9P217 1185 aa5.17□□□□□ -1.58
VPS41-212ENST00000482217 CTDP1Q9Y5B0 961 aaPredicted RBP5.17□□□□□ -1.58
VPS41-212ENST00000482217 TRAV20A0A0B4J274 112 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 CCDC163A0A0D9SF12 145 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 BIN1O00499 593 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 PPP1R12AO14974 1030 aaPredicted RBP5.16□□□□□ -1.58
VPS41-212ENST00000482217 CD8BP10966 210 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 ENDOUP21128 410 aaKnown RBP5.16□□□□□ -1.58
VPS41-212ENST00000482217 CALRP27797 417 aaKnown RBP5.16□□□□□ -1.58
VPS41-212ENST00000482217 HOXC12P31275 282 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 BMP8BP34820 402 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 CTSKP43235 329 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 NOP2P46087 812 aaKnown RBP5.16□□□□□ -1.58
VPS41-212ENST00000482217 PCBP3P57721 371 aaKnown RBP5.16□□□□□ -1.58
VPS41-212ENST00000482217 AMPD2Q01433 879 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 POU5F1BQ06416 359 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 PPP2R5DQ14738 602 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 TMEM67Q5HYA8 995 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 LCE3BQ5TA77 95 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 SPRED2Q7Z698 418 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 PRPF38AQ8NAV1 312 aaKnown RBP5.16□□□□□ -1.58
VPS41-212ENST00000482217 LINC00116Q8NCU8 138 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 NGDNQ8NEJ9 315 aaKnown RBP5.16□□□□□ -1.58
VPS41-212ENST00000482217 SVIPQ8NHG7 77 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 UBE2FQ969M7 185 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 TCTN2Q96GX1 697 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 ZDHHC15Q96MV8 337 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 NKX2-4Q9H2Z4 354 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 ARNT2Q9HBZ2 717 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 ARHGEF4Q9NR80 690 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 TMEM260Q9NX78 707 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 FRMD4BQ9Y2L6 1034 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 PRKAB1Q9Y478 270 aa5.16□□□□□ -1.58
VPS41-212ENST00000482217 H0Y8X5 98 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 RBAK-RBAKDNI3L0D1 243 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 KCNH1O95259 989 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 FOSP01100 380 aaPredicted RBP5.15□□□□□ -1.59
VPS41-212ENST00000482217 FAM153BP0C7A2 387 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 FGFR1P11362 822 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 ITGB5P18084 799 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 TXKP42681 527 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 CDKN1CP49918 316 aaPredicted RBP5.15□□□□□ -1.59
VPS41-212ENST00000482217 BNIP3Q12983 259 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 SIM2Q14190 667 aaPredicted RBP5.15□□□□□ -1.59
VPS41-212ENST00000482217 ZNF792Q3KQV3 632 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 GTF2IRD2BQ6EKJ0 949 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 ZNF574Q6ZN55 896 aaPredicted RBP5.15□□□□□ -1.59
VPS41-212ENST00000482217 RNF111Q6ZNA4 994 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 GTF2IRD2Q86UP8 949 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 HOMER1Q86YM7 354 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms