RNA–Protein interactions for RNA: ENST00000481194.1

CCM2-214, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 5,304 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-214ENST00000481194 USP17L19D6RCP7 530 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 USP17L20D6RJB6 530 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 USP17L24Q0WX57 530 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 TKFCQ3LXA3 575 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 FAM163AQ96GL9 167 aaPredicted RBP21.41■■□□□ 1.02
CCM2-214ENST00000481194 FAM196BA6NMK8 535 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 ZNF75DP51815 510 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 DPP9Q86TI2 863 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 UBE2SQ16763 222 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 XKR9Q5GH70 373 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 MSANTD4Q8NCY6 345 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 MXD3Q9BW11 206 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 PCDHA6Q9UN73 950 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 PCDHB6Q9Y5E3 794 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 PCDHA8Q9Y5H6 950 aa21.41■■□□□ 1.02
CCM2-214ENST00000481194 GTF3C2Q8WUA4 911 aaPredicted RBP21.41■■□□□ 1.02
CCM2-214ENST00000481194 PTF1AQ7RTS3 328 aa21.4■■□□□ 1.02
CCM2-214ENST00000481194 PNMA8AQ86V59 439 aaPredicted RBP21.4■■□□□ 1.02
CCM2-214ENST00000481194 LMBR1Q8WVP7 490 aa21.4■■□□□ 1.02
CCM2-214ENST00000481194 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.4■■□□□ 1.02
CCM2-214ENST00000481194 M0QZ92 97 aa21.4■■□□□ 1.02
CCM2-214ENST00000481194 CTNND1O60716 968 aaKnown RBP21.4■■□□□ 1.02
CCM2-214ENST00000481194 CCDC84Q86UT8 332 aaPredicted RBP21.4■■□□□ 1.02
CCM2-214ENST00000481194 GIMAP8Q8ND71 665 aaPredicted RBP21.4■■□□□ 1.02
CCM2-214ENST00000481194 CCDC42Q96M95 316 aa21.4■■□□□ 1.02
CCM2-214ENST00000481194 MRIQ9BWK5 157 aa21.4■■□□□ 1.02
CCM2-214ENST00000481194 ZBTB8OSQ8IWT0 167 aa21.4■■□□□ 1.02
CCM2-214ENST00000481194 DEPTORQ8TB45 409 aa21.4■■□□□ 1.02
CCM2-214ENST00000481194 ZBTB12Q9Y330 459 aaPredicted RBP21.4■■□□□ 1.02
CCM2-214ENST00000481194 PAXBP1Q9Y5B6 917 aa21.4■■□□□ 1.02
CCM2-214ENST00000481194 NUCKS1Q9H1E3 243 aaKnown RBP21.4■■□□□ 1.02
CCM2-214ENST00000481194 KDM3BQ7LBC6 1761 aa21.4■■□□□ 1.02
CCM2-214ENST00000481194 ERCC5P28715 1186 aaPredicted RBP21.39■■□□□ 1.02
CCM2-214ENST00000481194 QRICH1Q2TAL8 776 aa21.39■■□□□ 1.02
CCM2-214ENST00000481194 AKT1S1Q96B36 256 aa21.39■■□□□ 1.02
CCM2-214ENST00000481194 PUF60Q9UHX1 559 aaKnown RBP21.39■■□□□ 1.02
CCM2-214ENST00000481194 NOD1Q9Y239 953 aa21.39■■□□□ 1.02
CCM2-214ENST00000481194 PPP2R5AQ15172 486 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 RESP18Q5W5W9 173 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 FAM20AQ96MK3 541 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 TSGA10Q9BZW7 698 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 ZKSCAN5Q9Y2L8 839 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 SPDYE2BA6NHP3 402 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 SPDYE6P0CI01 402 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 PTPREP23469 700 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 TXNRD3Q86VQ6 643 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 KIAA1024Q9UPX6 916 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 USP54Q70EL1 1684 aa21.39■■□□□ 1.01
CCM2-214ENST00000481194 JAK3P52333 1124 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 KARSQ15046 597 aaKnown RBP21.38■■□□□ 1.01
CCM2-214ENST00000481194 IGSF22Q8N9C0 903 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 UBXN4Q92575 508 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 CHGBP05060 677 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 FAM26FQ5R3K3 315 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 PLVAPQ9BX97 442 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 IL25Q9H293 177 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 AFDNP55196 1824 aaKnown RBP21.38■■□□□ 1.01
CCM2-214ENST00000481194 SPP2Q13103 211 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 PSMD2Q13200 908 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.38■■□□□ 1.016e-6■■■■■ 48.1
CCM2-214ENST00000481194 TRMT1Q9NXH9 659 aaKnown RBP21.38■■□□□ 1.01
CCM2-214ENST00000481194 MRVI1Q9Y6F6 885 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 NEK9Q8TD19 979 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 KIFAP3Q92845 792 aa21.38■■□□□ 1.01
CCM2-214ENST00000481194 KRT86O43790 486 aa21.37■■□□□ 1.01
CCM2-214ENST00000481194 USP11P51784 963 aa21.37■■□□□ 1.01
CCM2-214ENST00000481194 FAM102BQ5T8I3 360 aa21.37■■□□□ 1.01
CCM2-214ENST00000481194 FBXL16Q8N461 479 aa21.37■■□□□ 1.01
CCM2-214ENST00000481194 SRBD1Q8N5C6 995 aaKnown RBP21.37■■□□□ 1.01
CCM2-214ENST00000481194 TRPC6Q9Y210 931 aa21.37■■□□□ 1.01
CCM2-214ENST00000481194 EXOC3O60645 756 aa21.37■■□□□ 1.01
CCM2-214ENST00000481194 URI1O94763 535 aaPredicted RBP21.37■■□□□ 1.01
CCM2-214ENST00000481194 DHTKD1Q96HY7 919 aaPredicted RBP21.37■■□□□ 1.01
CCM2-214ENST00000481194 SLC26A4O43511 780 aa21.37■■□□□ 1.01
CCM2-214ENST00000481194 PSAPP07602 524 aa21.37■■□□□ 1.01
CCM2-214ENST00000481194 SEMA3FQ13275 785 aa21.37■■□□□ 1.01
CCM2-214ENST00000481194 DMP1Q13316 513 aaPredicted RBP21.37■■□□□ 1.01
CCM2-214ENST00000481194 ANGEL2Q5VTE6 544 aaKnown RBP21.37■■□□□ 1.01
CCM2-214ENST00000481194 N4BP1O75113 896 aaKnown RBP21.37■■□□□ 1.01
CCM2-214ENST00000481194 MAP3K9P80192 1104 aa21.37■■□□□ 1.01
CCM2-214ENST00000481194 METTL14Q9HCE5 456 aaKnown RBP21.37■■□□□ 1.01
CCM2-214ENST00000481194 NOP2P46087 812 aaKnown RBP21.36■■□□□ 1.01
CCM2-214ENST00000481194 SPATA1Q5VX52 437 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 VCPKMTQ9H867 229 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 SCN11AQ9UI33 1791 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 PGBD1Q96JS3 809 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 GGA3Q9NZ52 723 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 MORC3Q14149 939 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 FAM83AQ86UY5 434 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 FAM178BQ8IXR5 827 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 TRERF1Q96PN7 1200 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 NAA15Q9BXJ9 866 aaKnown RBP21.36■■□□□ 1.01
CCM2-214ENST00000481194 MAPK8IP1Q9UQF2 711 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 CEP83Q9Y592 693 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 TACC1O75410 805 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 TFDP1Q14186 410 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 ZNF280CQ8ND82 737 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 STAMQ92783 540 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 CCDC51Q96ER9 411 aa21.36■■□□□ 1.01
CCM2-214ENST00000481194 VPS16Q9H269 839 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms