RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 VPS16Q9H269 839 aa14.62□□□□□ -0.07
SEC13-216ENST00000479868 TAB2Q9NYJ8 693 aa14.62□□□□□ -0.07
SEC13-216ENST00000479868 PPP2R2CQ9Y2T4 447 aa14.62□□□□□ -0.07
SEC13-216ENST00000479868 N4BP3O15049 544 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 CCP110O43303 1012 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 MRPL12P52815 198 aaKnown RBP14.61□□□□□ -0.07
SEC13-216ENST00000479868 COPB1P53618 953 aaKnown RBP14.61□□□□□ -0.07
SEC13-216ENST00000479868 PPP4R3AQ6IN85 833 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 TOGARAM2Q6ZUX3 1019 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 TMEM179Q6ZVK1 233 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 CALML4Q96GE6 196 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 C7orf25Q9BPX7 421 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 BLOC1S4Q9NUP1 217 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 RGS17Q9UGC6 210 aaPredicted RBP14.61□□□□□ -0.07
SEC13-216ENST00000479868 ATRNL1Q5VV63 1379 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 USP17L15C9J2P7 530 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 USP17L13C9JLJ4 530 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 USP17L11C9JVI0 530 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 USP17L18D6R9N7 530 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 USP17L22D6RA61 530 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 USP17L17D6RBQ6 530 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 USP17L19D6RCP7 530 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 USP17L20D6RJB6 530 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 H7C1D1 291 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 ASIC1P78348 528 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 SPAG1Q07617 926 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 USP17L24Q0WX57 530 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 RRP1BQ14684 758 aaKnown RBP14.61□□□□□ -0.07
SEC13-216ENST00000479868 NAA30Q147X3 362 aaPredicted RBP14.61□□□□□ -0.07
SEC13-216ENST00000479868 ABCB5Q2M3G0 1257 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 USP17L6PQ6QN14 398 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 PPFIBP1Q86W92 1011 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 GJA10Q969M2 543 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 PNMA5Q96PV4 448 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 NUP88Q99567 741 aaPredicted RBP14.61□□□□□ -0.07
SEC13-216ENST00000479868 NUDT12Q9BQG2 462 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 PDCL3Q9H2J4 239 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 ATF5Q9Y2D1 282 aaPredicted RBP14.61□□□□□ -0.07
SEC13-216ENST00000479868 PCDHA1Q9Y5I3 950 aa14.61□□□□□ -0.07
SEC13-216ENST00000479868 PSME4Q14997 1843 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 F5H6K3 240 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 GYPCP04921 128 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 CASP14P31944 242 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 KLRC3Q07444 240 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 PDE4DQ08499 809 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 NCBP1Q09161 790 aaKnown RBP14.6□□□□□ -0.07
SEC13-216ENST00000479868 STK4Q13043 487 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 CDC37Q16543 378 aaPredicted RBP14.6□□□□□ -0.07
SEC13-216ENST00000479868 TMEM266Q2M3C6 531 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 CC2D2BQ6DHV5 1058 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 TRIM65Q6PJ69 517 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 SUPT20HQ8NEM7 779 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 HAS1Q92839 578 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 PANX2Q96RD6 677 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 DDX25Q9UHL0 483 aaKnown RBP14.6□□□□□ -0.07
SEC13-216ENST00000479868 PSMA7O14818 248 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 FANCGO15287 622 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 ENTPD3O75355 529 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 FCER1AP12319 257 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 ETF1P62495 437 aaKnown RBP14.6□□□□□ -0.07
SEC13-216ENST00000479868 SEMA3FQ13275 785 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 STIM1Q13586 685 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 MTF1Q14872 753 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 CSRNP1Q96S65 589 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 EXOC1Q9NV70 894 aa14.6□□□□□ -0.07
SEC13-216ENST00000479868 ITIH6Q6UXX5 1313 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 SOWAHDA6NJG2 315 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 ZSCAN12O43309 604 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 MFAP3LO75121 409 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 GH2P01242 217 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 FXR1P51114 621 aaKnown RBP eCLIP14.59□□□□□ -0.07
SEC13-216ENST00000479868 SNAP25P60880 206 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 PDIA5Q14554 519 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 MCM6Q14566 821 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 TTI2Q6NXR4 508 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 POTEAQ6S8J7 498 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 ANKRD20A12PQ8NF67 263 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 ANKRD7Q92527 254 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 TRIM47Q96LD4 638 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 DESI2Q9BSY9 194 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 NDUFB10O96000 172 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 AMPD3Q01432 767 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 SV2BQ7L1I2 683 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 GMCL1P1Q8NEA9 526 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 SNX29Q8TEQ0 813 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 LARP4BQ92615 738 aaKnown RBP14.59□□□□□ -0.07
SEC13-216ENST00000479868 HPS3Q969F9 1004 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 SRRTQ9BXP5 876 aaKnown RBP14.59□□□□□ -0.07
SEC13-216ENST00000479868 RAB34Q9BZG1 259 aa14.59□□□□□ -0.07
SEC13-216ENST00000479868 ZNF215Q9UL58 517 aaPredicted RBP14.59□□□□□ -0.07
SEC13-216ENST00000479868 MYMKA6NI61 221 aa14.58□□□□□ -0.08
SEC13-216ENST00000479868 RAD17O75943 681 aa14.58□□□□□ -0.08
SEC13-216ENST00000479868 KCNK18Q7Z418 384 aa14.58□□□□□ -0.08
SEC13-216ENST00000479868 EEF2KMTQ96G04 330 aa14.58□□□□□ -0.08
SEC13-216ENST00000479868 CDK5RAP3Q96JB5 506 aa14.58□□□□□ -0.08
SEC13-216ENST00000479868 MAP7D2Q96T17 732 aa14.58□□□□□ -0.08
SEC13-216ENST00000479868 DUSP9Q99956 384 aaKnown RBP14.58□□□□□ -0.08
SEC13-216ENST00000479868 STK17AQ9UEE5 414 aa14.58□□□□□ -0.08
SEC13-216ENST00000479868 DNAI1Q9UI46 699 aa14.58□□□□□ -0.08
SEC13-216ENST00000479868 COL4A5P29400 1685 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms