RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 CNTNAP5Q8WYK1 1306 aa7.98□□□□□ -1.13
BRCA1-215ENST00000478531 CFBP00751 764 aa7.98□□□□□ -1.13
BRCA1-215ENST00000478531 RPS6P62753 249 aaKnown RBP7.98□□□□□ -1.13
BRCA1-215ENST00000478531 CCT2P78371 535 aaKnown RBP7.98□□□□□ -1.13
BRCA1-215ENST00000478531 PRAMEF19Q5SWL8 479 aa7.98□□□□□ -1.13
BRCA1-215ENST00000478531 DEFB118Q96PH6 123 aa7.98□□□□□ -1.13
BRCA1-215ENST00000478531 AGXT2Q9BYV1 514 aa7.98□□□□□ -1.13
BRCA1-215ENST00000478531 NCOA5Q9HCD5 579 aaKnown RBP7.98□□□□□ -1.13
BRCA1-215ENST00000478531 HMX1Q9NP08 348 aaPredicted RBP7.98□□□□□ -1.13
BRCA1-215ENST00000478531 MRPL11Q9Y3B7 192 aaKnown RBP7.98□□□□□ -1.13
BRCA1-215ENST00000478531 NID2Q14112 1375 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 SOWAHBA6NEL2 793 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 CYBAP13498 195 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 EN2P19622 333 aaPredicted RBP7.97□□□□□ -1.13
BRCA1-215ENST00000478531 ADD1P35611 737 aaKnown RBP7.97□□□□□ -1.13
BRCA1-215ENST00000478531 NEK4P51957 841 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 RCAN1P53805 252 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 MAP3K21Q5TCX8 1036 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 IFFO2Q5TF58 517 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 ARMCX2Q7L311 632 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 HEATR3Q7Z4Q2 680 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 FBXL16Q8N461 479 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 FAM133AQ8N9E0 248 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 TRPV1Q8NER1 839 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 TBC1D5Q92609 795 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 GPKOWQ92917 476 aaPredicted RBP eCLIP7.97□□□□□ -1.13
BRCA1-215ENST00000478531 FGD4Q96M96 766 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 PAK6Q9NQU5 681 aaPredicted RBP7.97□□□□□ -1.13
BRCA1-215ENST00000478531 ZHX1Q9UKY1 873 aaPredicted RBP7.97□□□□□ -1.13
BRCA1-215ENST00000478531 CNPY2Q9Y2B0 182 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 DIS3Q9Y2L1 958 aaKnown RBP7.97□□□□□ -1.13
BRCA1-215ENST00000478531 KIAA1217Q5T5P2 1943 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 ASTN1O14525 1302 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 CCDC196A0A1B0GTZ2 297 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 OPLAHO14841 1288 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 PDIA3P30101 505 aaKnown RBP7.97□□□□□ -1.13
BRCA1-215ENST00000478531 HOXA13P31271 388 aaPredicted RBP7.97□□□□□ -1.13
BRCA1-215ENST00000478531 AK2P54819 239 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 ANO1Q5XXA6 986 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 MCF2L2Q86YR7 1114 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 U2AF1L4Q8WU68 220 aaKnown RBP7.97□□□□□ -1.13
BRCA1-215ENST00000478531 PHKBQ93100 1093 aa7.97□□□□□ -1.13
BRCA1-215ENST00000478531 FAM217BQ9NTX9 383 aaPredicted RBP7.97□□□□□ -1.13
BRCA1-215ENST00000478531 SYNGAP1Q96PV0 1343 aa7.96□□□□□ -1.13
BRCA1-215ENST00000478531 TFRCP02786 760 aaKnown RBP7.96□□□□□ -1.14
BRCA1-215ENST00000478531 GJB1P08034 283 aa7.96□□□□□ -1.14
BRCA1-215ENST00000478531 SMARCA1P28370 1054 aa7.96□□□□□ -1.14
BRCA1-215ENST00000478531 ALDH5A1P51649 535 aaPredicted RBP7.96□□□□□ -1.14
BRCA1-215ENST00000478531 TRAF1Q13077 416 aa7.96□□□□□ -1.14
BRCA1-215ENST00000478531 EEPD1Q7L9B9 569 aa7.96□□□□□ -1.14
BRCA1-215ENST00000478531 ZNF467Q7Z7K2 595 aaPredicted RBP7.96□□□□□ -1.14
BRCA1-215ENST00000478531 LENG1Q96BZ8 264 aaPredicted RBP7.96□□□□□ -1.14
BRCA1-215ENST00000478531 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.96□□□□□ -1.14
BRCA1-215ENST00000478531 ADD3Q9UEY8 706 aaKnown RBP7.96□□□□□ -1.14
BRCA1-215ENST00000478531 V9GY48 417 aaPredicted RBP7.96□□□□□ -1.14
BRCA1-215ENST00000478531 ASB14A6NK59 587 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 CPLX1O14810 134 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 SNAI1O95863 264 aaPredicted RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 IGHA2P01877 340 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 EIF2AK2P19525 551 aaKnown RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 GJA8P48165 433 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 NAPAP54920 295 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 AKAP17AQ02040 695 aaKnown RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 FUT2Q10981 343 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 MKRN4PQ13434 485 aaPredicted RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 ANKRD1Q15327 319 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 WWC2Q6AWC2 1192 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 MAMDC4Q6UXC1 1216 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 FCHSD1Q86WN1 690 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 FBXO16Q8IX29 292 aaPredicted RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 MSL3Q8N5Y2 521 aaKnown RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 SYTL5Q8TDW5 730 aaPredicted RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 SHISA4Q96DD7 197 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 IL17RAQ96F46 866 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 ZNF274Q96GC6 653 aaPredicted RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 SLC26A6Q9BXS9 759 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 COL20A1Q9P218 1284 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 DDX20Q9UHI6 824 aaKnown RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 TPCN1Q9ULQ1 816 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 GCOM1H8Y6P7 765 aaPredicted RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 SEPT4O43236 478 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 DTNBO60941 627 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 SGPL1O95470 568 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 POLR2MP0CAP2 368 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 RBM25P49756 843 aaKnown RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 HSD17B4P51659 736 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 EVCP57679 992 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 PDE4DQ08499 809 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 ACVR2BQ13705 512 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 PPP2R5BQ15173 497 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 ARHGEF16Q5VV41 709 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 RGS22Q8NE09 1264 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 CUL5Q93034 780 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 TAAR1Q96RJ0 339 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 RMDN3Q96TC7 470 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 MPHOSPH6Q99547 160 aaKnown RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 SLKQ9H2G2 1235 aaPredicted RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 DOCK5Q9H7D0 1870 aa7.95□□□□□ -1.14
BRCA1-215ENST00000478531 RANBP2P49792 3224 aaKnown RBP7.95□□□□□ -1.14
BRCA1-215ENST00000478531 MYH7BA7E2Y1 1941 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms