RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 RNF207Q6ZRF8 634 aa16.5■□□□□ 0.23
UPF3A-204ENST00000475218 NUP133Q8WUM0 1156 aa16.5■□□□□ 0.23
UPF3A-204ENST00000475218 RUFY2Q8WXA3 655 aa16.5■□□□□ 0.23
UPF3A-204ENST00000475218 TOX2Q96NM4 488 aa16.5■□□□□ 0.23
UPF3A-204ENST00000475218 UBAC1Q9BSL1 405 aa16.5■□□□□ 0.23
UPF3A-204ENST00000475218 VTA1Q9NP79 307 aa16.5■□□□□ 0.23
UPF3A-204ENST00000475218 PRKAG2Q9UGJ0 569 aa16.5■□□□□ 0.23
UPF3A-204ENST00000475218 GRIN2DO15399 1336 aa16.5■□□□□ 0.23
UPF3A-204ENST00000475218 RBM47A0AV96 593 aaKnown RBP16.49■□□□□ 0.23
UPF3A-204ENST00000475218 E7EWF7 191 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 OPLAHO14841 1288 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 PPP1R11O60927 126 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-204ENST00000475218 CENPBP07199 599 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-204ENST00000475218 ANTXR2P58335 489 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 QRICH1Q2TAL8 776 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 IFIT1BQ5T764 474 aaKnown RBP16.49■□□□□ 0.23
UPF3A-204ENST00000475218 IQSEC1Q6DN90 963 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 Q7L0L9 218 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 PCSK9Q8NBP7 692 aaKnown RBP16.49■□□□□ 0.23
UPF3A-204ENST00000475218 MAD2L2Q9UI95 211 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 TBX21Q9UL17 535 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 U3KPZ7 1027 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-204ENST00000475218 DYNC1LI2O43237 492 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-204ENST00000475218 PARP1P09874 1014 aaKnown RBP16.49■□□□□ 0.23
UPF3A-204ENST00000475218 FSCN1Q16658 493 aaKnown RBP16.49■□□□□ 0.23
UPF3A-204ENST00000475218 CXCL17Q6UXB2 119 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 SLC43A3Q8NBI5 491 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 RGS22Q8NE09 1264 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 MTMR8Q96EF0 704 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 GLT1D1Q96MS3 346 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 PNMA2Q9UL42 364 aa16.49■□□□□ 0.23
UPF3A-204ENST00000475218 EYSQ5T1H1 3165 aa16.48■□□□□ 0.23
UPF3A-204ENST00000475218 LOC102724159A0A0B4J2E5 919 aa16.48■□□□□ 0.23
UPF3A-204ENST00000475218 PALM3A6NDB9 673 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-204ENST00000475218 PWP2Q15269 919 aaKnown RBP16.48■□□□□ 0.23
UPF3A-204ENST00000475218 DUSP28Q4G0W2 176 aa16.48■□□□□ 0.23
UPF3A-204ENST00000475218 GPR153Q6NV75 609 aa16.48■□□□□ 0.23
UPF3A-204ENST00000475218 KIAA1211Q6ZU35 1233 aa16.48■□□□□ 0.23
UPF3A-204ENST00000475218 CHST3Q7LGC8 479 aa16.48■□□□□ 0.23
UPF3A-204ENST00000475218 FAM126BQ8IXS8 530 aa16.48■□□□□ 0.23
UPF3A-204ENST00000475218 SPC25Q9HBM1 224 aa16.48■□□□□ 0.23
UPF3A-204ENST00000475218 ADD3Q9UEY8 706 aaKnown RBP16.48■□□□□ 0.23
UPF3A-204ENST00000475218 ARVCFO00192 962 aa16.47■□□□□ 0.23
UPF3A-204ENST00000475218 NOL8Q76FK4 1167 aaKnown RBP16.47■□□□□ 0.23
UPF3A-204ENST00000475218 MB21D2Q8IYB1 491 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-204ENST00000475218 LSG1Q9H089 658 aaKnown RBP16.47■□□□□ 0.23
UPF3A-204ENST00000475218 VAT1LQ9HCJ6 419 aa16.47■□□□□ 0.23
UPF3A-204ENST00000475218 TMEM39AQ9NV64 488 aa16.47■□□□□ 0.23
UPF3A-204ENST00000475218 Q9Y3F1 56 aa16.47■□□□□ 0.23
UPF3A-204ENST00000475218 RBM8AQ9Y5S9 174 aaKnown RBP16.47■□□□□ 0.23
UPF3A-204ENST00000475218 ABCB11O95342 1321 aa16.46■□□□□ 0.23
UPF3A-204ENST00000475218 A0A0C4DFX4 3053 aa16.46■□□□□ 0.23
UPF3A-204ENST00000475218 A0A0U1RQG5 324 aaPredicted RBP16.46■□□□□ 0.23
UPF3A-204ENST00000475218 CD4P01730 458 aa16.46■□□□□ 0.23
UPF3A-204ENST00000475218 DNERQ8NFT8 737 aa16.46■□□□□ 0.23
UPF3A-204ENST00000475218 SYTL5Q8TDW5 730 aaPredicted RBP16.46■□□□□ 0.23
UPF3A-204ENST00000475218 WDR11Q9BZH6 1224 aa16.46■□□□□ 0.23
UPF3A-204ENST00000475218 GPHNQ9NQX3 736 aaPredicted RBP16.46■□□□□ 0.23
UPF3A-204ENST00000475218 CHD9Q3L8U1 2897 aa16.46■□□□□ 0.23
UPF3A-204ENST00000475218 KLRF2D3W0D1 207 aa16.46■□□□□ 0.22
UPF3A-204ENST00000475218 CYTH3O43739 400 aa16.46■□□□□ 0.22
UPF3A-204ENST00000475218 TROAPQ12815 778 aa16.46■□□□□ 0.22
UPF3A-204ENST00000475218 GRM4Q14833 912 aa16.46■□□□□ 0.22
UPF3A-204ENST00000475218 IGDCC4Q8TDY8 1250 aa16.46■□□□□ 0.22
UPF3A-204ENST00000475218 TAAR1Q96RJ0 339 aa16.46■□□□□ 0.22
UPF3A-204ENST00000475218 BAZ2BQ9UIF8 2168 aaKnown RBP16.45■□□□□ 0.22
UPF3A-204ENST00000475218 DCDC2CA8MYV0 355 aa16.45■□□□□ 0.22
UPF3A-204ENST00000475218 ARIH2O95376 493 aa16.45■□□□□ 0.22
UPF3A-204ENST00000475218 RAG1P15918 1043 aa16.45■□□□□ 0.22
UPF3A-204ENST00000475218 FBXO11Q86XK2 927 aa16.45■□□□□ 0.22
UPF3A-204ENST00000475218 DEFB123Q8N688 67 aa16.45■□□□□ 0.22
UPF3A-204ENST00000475218 COPS5Q92905 334 aa16.45■□□□□ 0.22
UPF3A-204ENST00000475218 ESYT1Q9BSJ8 1104 aa16.45■□□□□ 0.22
UPF3A-204ENST00000475218 AP5M1Q9H0R1 490 aa16.45■□□□□ 0.22
UPF3A-204ENST00000475218 IFIT3O14879 490 aaKnown RBP16.44■□□□□ 0.22
UPF3A-204ENST00000475218 PSMC6P62333 389 aa16.44■□□□□ 0.22
UPF3A-204ENST00000475218 GHRHRQ02643 423 aa16.44■□□□□ 0.22
UPF3A-204ENST00000475218 TRDNQ13061 729 aa16.44■□□□□ 0.22
UPF3A-204ENST00000475218 NCOA7Q8NI08 942 aa16.44■□□□□ 0.22
UPF3A-204ENST00000475218 MTMR10Q9NXD2 777 aa16.44■□□□□ 0.22
UPF3A-204ENST00000475218 KIAA1217Q5T5P2 1943 aa16.44■□□□□ 0.22
UPF3A-204ENST00000475218 CDH23Q9H251 3354 aa16.44■□□□□ 0.22
UPF3A-204ENST00000475218 TIMP1P01033 207 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 PDE4DQ08499 809 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 ITGA7Q13683 1181 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 CCDC62Q6P9F0 684 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 C16orf59Q7L2K0 433 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 VTI1AQ96AJ9 217 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 MAF1Q9H063 256 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 RIOX1Q9H6W3 641 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 MROH7Q68CQ1 1323 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 SCN10AQ9Y5Y9 1956 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 DHX16O60231 1041 aaKnown RBP16.43■□□□□ 0.22
UPF3A-204ENST00000475218 HSD17B4P51659 736 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 LY9Q9HBG7 655 aa16.43■□□□□ 0.22
UPF3A-204ENST00000475218 UMODL1Q5DID0 1318 aa16.42■□□□□ 0.22
UPF3A-204ENST00000475218 ZBTB5O15062 677 aa16.42■□□□□ 0.22
UPF3A-204ENST00000475218 CABYRO75952 493 aa16.42■□□□□ 0.22
UPF3A-204ENST00000475218 PURAQ00577 322 aaKnown RBP16.42■□□□□ 0.22
UPF3A-204ENST00000475218 FPGSQ05932 587 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms