RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	HESX1	Q9UBX0	185 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	MCM8	Q9UJA3	840 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426		H0Y626	953 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	ARHGAP33	O14559	1287 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	APAF1	O14727	1248 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	HDAC3	O15379	428 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	PDE8A	O60658	829 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	SOCS5	O75159	536 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	TRIM27	P14373	513 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	HNF1B	P35680	557 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	HADHA	P40939	763 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	ATP5O	P48047	213 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	ARFIP1	P53367	373 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	VAC14	Q08AM6	782 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	MTX1	Q13505	466 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	SLC14A2	Q15849	920 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	ANKDD1A	Q495B1	522 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	SLC6A19	Q695T7	634 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	KDELC1	Q6UW63	502 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	ARHGAP22	Q7Z5H3	698 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	STRA8	Q7Z7C7	330 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	RALYL	Q86SE5	291 aa	Known RBP	3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	SPATA5	Q8NB90	893 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	PRR7	Q8TB68	274 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	WHAMM	Q8TF30	809 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	MTMR9	Q96QG7	549 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	PARVG	Q9HBI0	331 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	NUDC	Q9Y266	331 aa		3.88	□□□□□ -1.79
UBR3-208	ENST00000474426	TTLL13P	A6NNM8	815 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	EYA2	O00167	538 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ZBTB43	O43298	467 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	MGEA5	O60502	916 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	POP4	O95707	220 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	CAVIN2	O95810	425 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	S100A6	P06703	90 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	PLCG2	P16885	1265 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	GART	P22102	1010 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	XPA	P23025	273 aa	Predicted RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	IDUA	P35475	653 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	NR5A1	Q13285	461 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	SQSTM1	Q13501	440 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ATP13A4	Q4VNC1	1196 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	BEND6	Q5SZJ8	279 aa	Predicted RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	HECTD3	Q5T447	861 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	INTS11	Q5TA45	600 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	TPGS2	Q68CL5	300 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	DPY19L2	Q6NUT2	758 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ZNF354C	Q86Y25	554 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	HID1	Q8IV36	788 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	PPM1N	Q8N819	430 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	RASSF8	Q8NHQ8	419 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	INTS12	Q96CB8	462 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	RBM41	Q96IZ5	413 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	COG3	Q96JB2	828 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	MFSD14A	Q96MC6	490 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	TMUB1	Q9BVT8	246 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	METTL5	Q9NRN9	209 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	PPARGC1A	Q9UBK2	798 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	GRID1	Q9ULK0	1009 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	MTF2	Q9Y483	593 aa	Predicted RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	AFG3L2	Q9Y4W6	797 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	EMILIN1	Q9Y6C2	1016 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426		C9IYK1	514 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	AP3B1	O00203	1094 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	NDC80	O14777	642 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ZW10	O43264	779 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	STX6	O43752	255 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ACSL4	O60488	711 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	EVI2B	P34910	448 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ATP6V1E1	P36543	226 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ASMT	P46597	345 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	PRKG2	Q13237	762 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ELOA	Q14241	798 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	DSC3	Q14574	896 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	OASL	Q15646	514 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ELF2	Q15723	593 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	NEK5	Q6P3R8	708 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	LDHAL6A	Q6ZMR3	332 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ZNF619	Q8N2I2	560 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	CBARP	Q8N350	705 aa	Predicted RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	CCDC150	Q8NCX0	1101 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	CTCFL	Q8NI51	663 aa	Predicted RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	FBXO41	Q8TF61	875 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	LPIN2	Q92539	896 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	BAP1	Q92560	729 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	CUL5	Q93034	780 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	NRBF2	Q96F24	287 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	SAMD11	Q96NU1	681 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	RUFY1	Q96T51	708 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	BARD1	Q99728	777 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	THUMPD2	Q9BTF0	503 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	UPF3B	Q9BZI7	483 aa	Known RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	TRIM4	Q9C037	500 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	FKBP14	Q9NWM8	211 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	ZNF624	Q9P2J8	865 aa	Predicted RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	VTI1B	Q9UEU0	232 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	COG5	Q9UP83	839 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426	PCDHB13	Q9Y5F0	798 aa		3.87	□□□□□ -1.79
UBR3-208	ENST00000474426		H3BRB1	525 aa		3.87	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms