RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 TROAPQ12815 778 aa20.89■□□□□ 0.93
UPF3A-203ENST00000474056 C1orf53Q5VUE5 145 aa20.89■□□□□ 0.93
UPF3A-203ENST00000474056 MTMR8Q96EF0 704 aa20.89■□□□□ 0.93
UPF3A-203ENST00000474056 LY9Q9HBG7 655 aa20.89■□□□□ 0.93
UPF3A-203ENST00000474056 VTA1Q9NP79 307 aa20.89■□□□□ 0.93
UPF3A-203ENST00000474056 GNEQ9Y223 722 aaKnown RBP20.89■□□□□ 0.93
UPF3A-203ENST00000474056 LOC102724159A0A0B4J2E5 919 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 MOXD2PA6NHM9 499 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 CTAGE5O15320 804 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 PRC1O43663 620 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 NEFLP07196 543 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 SMPD1P17405 629 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 PWP2Q15269 919 aaKnown RBP20.88■□□□□ 0.93
UPF3A-203ENST00000474056 TMEM63BQ5T3F8 832 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 CASC1Q6TDU7 716 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 NOL8Q76FK4 1167 aaKnown RBP20.88■□□□□ 0.93
UPF3A-203ENST00000474056 TLK2Q86UE8 772 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 RGS22Q8NE09 1264 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 SPC25Q9HBM1 224 aa20.88■□□□□ 0.93
UPF3A-203ENST00000474056 PPP1R11O60927 126 aaPredicted RBP20.87■□□□□ 0.93
UPF3A-203ENST00000474056 ASGR1P07306 291 aa20.87■□□□□ 0.93
UPF3A-203ENST00000474056 BMP8BP34820 402 aa20.87■□□□□ 0.93
UPF3A-203ENST00000474056 MDM2Q00987 491 aaPredicted RBP20.87■□□□□ 0.93
UPF3A-203ENST00000474056 BEX3Q00994 111 aa20.87■□□□□ 0.93
UPF3A-203ENST00000474056 DNERQ8NFT8 737 aa20.87■□□□□ 0.93
UPF3A-203ENST00000474056 MTA3Q9BTC8 594 aa20.87■□□□□ 0.93
UPF3A-203ENST00000474056 MYL10Q9BUA6 226 aa20.87■□□□□ 0.93
UPF3A-203ENST00000474056 RIOX1Q9H6W3 641 aa20.87■□□□□ 0.93
UPF3A-203ENST00000474056 STARD7Q9NQZ5 370 aa20.87■□□□□ 0.93
UPF3A-203ENST00000474056 MRPL11Q9Y3B7 192 aaKnown RBP20.87■□□□□ 0.93
UPF3A-203ENST00000474056 A0A1W2PPC1 479 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 SH2B2O14492 632 aaPredicted RBP20.86■□□□□ 0.93
UPF3A-203ENST00000474056 ZBTB5O15062 677 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 CYTH3O43739 400 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 EDNRBP24530 442 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 MCM5P33992 734 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 GNASQ5JWF2 1037 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 IQSEC1Q6DN90 963 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 CATIPQ7Z7H3 387 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 HOMER1Q86YM7 354 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 ZNF654Q8IZM8 581 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 PCSK9Q8NBP7 692 aaKnown RBP20.86■□□□□ 0.93
UPF3A-203ENST00000474056 NUP133Q8WUM0 1156 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 AMNQ9BXJ7 453 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 PDLIM7Q9NR12 457 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 COL20A1Q9P218 1284 aa20.86■□□□□ 0.93
UPF3A-203ENST00000474056 LAMA3Q16787 3333 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 MYH7BA7E2Y1 1941 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 OPLAHO14841 1288 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 NKX3-2P78367 333 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 TLE2Q04725 743 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 PDE4DQ08499 809 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 SH3RF1Q7Z6J0 888 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 MCF2L2Q86YR7 1114 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 SYTL5Q8TDW5 730 aaPredicted RBP20.85■□□□□ 0.93
UPF3A-203ENST00000474056 TAAR1Q96RJ0 339 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 PIGSQ96S52 555 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 LRRC2Q9BYS8 371 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 PRDM5Q9NQX1 630 aaPredicted RBP20.85■□□□□ 0.93
UPF3A-203ENST00000474056 PRKAG2Q9UGJ0 569 aa20.85■□□□□ 0.93
UPF3A-203ENST00000474056 DYNC1LI2O43237 492 aaPredicted RBP20.84■□□□□ 0.93
UPF3A-203ENST00000474056 TMEM87BQ96K49 555 aa20.84■□□□□ 0.93
UPF3A-203ENST00000474056 GLT1D1Q96MS3 346 aa20.84■□□□□ 0.93
UPF3A-203ENST00000474056 MAF1Q9H063 256 aa20.84■□□□□ 0.93
UPF3A-203ENST00000474056 SZT2Q5T011 3432 aa20.84■□□□□ 0.93
UPF3A-203ENST00000474056 RBM47A0AV96 593 aaKnown RBP20.83■□□□□ 0.93
UPF3A-203ENST00000474056 PQBP1O60828 265 aaKnown RBP20.83■□□□□ 0.93
UPF3A-203ENST00000474056 DDAH1O94760 285 aa20.83■□□□□ 0.93
UPF3A-203ENST00000474056 CFBP00751 764 aa20.83■□□□□ 0.93
UPF3A-203ENST00000474056 DUSP28Q4G0W2 176 aa20.83■□□□□ 0.93
UPF3A-203ENST00000474056 RNF20Q5VTR2 975 aa20.83■□□□□ 0.93
UPF3A-203ENST00000474056 MPHOSPH6Q99547 160 aaKnown RBP20.83■□□□□ 0.93
UPF3A-203ENST00000474056 WDR11Q9BZH6 1224 aa20.83■□□□□ 0.93
UPF3A-203ENST00000474056 UBE2OQ9C0C9 1292 aaKnown RBP20.83■□□□□ 0.93
UPF3A-203ENST00000474056 AP5M1Q9H0R1 490 aa20.83■□□□□ 0.93
UPF3A-203ENST00000474056 Q9Y3F1 56 aa20.83■□□□□ 0.93
UPF3A-203ENST00000474056 PCDHA1Q9Y5I3 950 aa20.83■□□□□ 0.93
UPF3A-203ENST00000474056 ELP1O95163 1332 aa20.82■□□□□ 0.92
UPF3A-203ENST00000474056 TRIM43BA6NCK2 446 aa20.82■□□□□ 0.92
UPF3A-203ENST00000474056 FSCN1Q16658 493 aaKnown RBP20.82■□□□□ 0.92
UPF3A-203ENST00000474056 NFXL1Q6ZNB6 911 aa20.82■□□□□ 0.92
UPF3A-203ENST00000474056 RASEFQ8IZ41 740 aa20.82■□□□□ 0.92
UPF3A-203ENST00000474056 CTCFLQ8NI51 663 aaPredicted RBP20.82■□□□□ 0.92
UPF3A-203ENST00000474056 TRIM43Q96BQ3 446 aaPredicted RBP20.82■□□□□ 0.92
UPF3A-203ENST00000474056 MAP3K14Q99558 947 aa20.82■□□□□ 0.92
UPF3A-203ENST00000474056 CCDC69A6NI79 296 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 CLTBP09497 229 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 RXRAP19793 462 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 LIFRP42702 1097 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 HSD17B4P51659 736 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 GHRHRQ02643 423 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 RAB11FIP4Q86YS3 637 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 TDHQ8IZJ6 230 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 PIBF1Q8WXW3 757 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 VTI1AQ96AJ9 217 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 RMDN3Q96TC7 470 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 LBHD1Q9BQE6 289 aaPredicted RBP20.81■□□□□ 0.92
UPF3A-203ENST00000474056 SCN10AQ9Y5Y9 1956 aa20.81■□□□□ 0.92
UPF3A-203ENST00000474056 PNMA6FA0A0J9YX94 578 aa20.8■□□□□ 0.92
UPF3A-203ENST00000474056 A0A0U1RQG5 324 aaPredicted RBP20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms