RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LOC102724159A0A0B4J2E5 919 aa22.03■■□□□ 1.12
CCDC88B-206ENST00000473405 FPGSQ05932 587 aa22.03■■□□□ 1.12
CCDC88B-206ENST00000473405 PWP2Q15269 919 aaKnown RBP22.03■■□□□ 1.12
CCDC88B-206ENST00000473405 IQSEC1Q6DN90 963 aa22.03■■□□□ 1.12
CCDC88B-206ENST00000473405 CXCL17Q6UXB2 119 aa22.03■■□□□ 1.12
CCDC88B-206ENST00000473405 UBA5Q9GZZ9 404 aa22.03■■□□□ 1.12
CCDC88B-206ENST00000473405 KAT14Q9H8E8 782 aa22.03■■□□□ 1.12
CCDC88B-206ENST00000473405 ZSWIM5Q9P217 1185 aa22.03■■□□□ 1.12
CCDC88B-206ENST00000473405 CTNNA3Q9UI47 895 aa22.03■■□□□ 1.12
CCDC88B-206ENST00000473405 PNMA2Q9UL42 364 aa22.03■■□□□ 1.12
CCDC88B-206ENST00000473405 TRANK1O15050 2925 aa22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 TIMP1P01033 207 aa22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 CALML3P27482 149 aa22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 RPS6P62753 249 aaKnown RBP22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 IRX6P78412 446 aaPredicted RBP22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 CCDC178Q5BJE1 867 aa22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 RNF207Q6ZRF8 634 aa22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 SLC43A3Q8NBI5 491 aa22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 VTI1AQ96AJ9 217 aa22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 GUCD1Q96NT3 240 aa22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 Q9Y3F1 56 aa22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 RAD50Q92878 1312 aa22.02■■□□□ 1.12
CCDC88B-206ENST00000473405 DYNC1LI2O43237 492 aaPredicted RBP22.01■■□□□ 1.11
CCDC88B-206ENST00000473405 EDNRBP24530 442 aa22.01■■□□□ 1.11
CCDC88B-206ENST00000473405 USH1GQ495M9 461 aa22.01■■□□□ 1.11
CCDC88B-206ENST00000473405 DUSP28Q4G0W2 176 aa22.01■■□□□ 1.11
CCDC88B-206ENST00000473405 KIAA1211Q6ZU35 1233 aa22.01■■□□□ 1.11
CCDC88B-206ENST00000473405 AP5M1Q9H0R1 490 aa22.01■■□□□ 1.11
CCDC88B-206ENST00000473405 SPTBN5Q9NRC6 3674 aaKnown RBP22.01■■□□□ 1.11
CCDC88B-206ENST00000473405 KIAA1217Q5T5P2 1943 aa22.01■■□□□ 1.11
CCDC88B-206ENST00000473405 GRIN2DO15399 1336 aa22.01■■□□□ 1.11
CCDC88B-206ENST00000473405 RBM47A0AV96 593 aaKnown RBP22■■□□□ 1.11
CCDC88B-206ENST00000473405 CABYRO75952 493 aa22■■□□□ 1.11
CCDC88B-206ENST00000473405 CD4P01730 458 aa22■■□□□ 1.11
CCDC88B-206ENST00000473405 SMAD3P84022 425 aaKnown RBP22■■□□□ 1.11
CCDC88B-206ENST00000473405 CDC37Q16543 378 aaPredicted RBP22■■□□□ 1.11
CCDC88B-206ENST00000473405 ASPRV1Q53RT3 343 aa22■■□□□ 1.11
CCDC88B-206ENST00000473405 ADGRF4Q8IZF3 695 aa22■■□□□ 1.11
CCDC88B-206ENST00000473405 RNPC3Q96LT9 517 aaKnown RBP22■■□□□ 1.11
CCDC88B-206ENST00000473405 FAM161BQ96MY7 647 aa22■■□□□ 1.11
CCDC88B-206ENST00000473405 KRT23Q9C075 422 aa22■■□□□ 1.11
CCDC88B-206ENST00000473405 CNNM2Q9H8M5 875 aa22■■□□□ 1.11
CCDC88B-206ENST00000473405 MFSD5Q6N075 450 aa21.99■■□□□ 1.11
CCDC88B-206ENST00000473405 WDR11Q9BZH6 1224 aa21.99■■□□□ 1.11
CCDC88B-206ENST00000473405 SCN10AQ9Y5Y9 1956 aa21.99■■□□□ 1.11
CCDC88B-206ENST00000473405 ITGA7Q13683 1181 aa21.98■■□□□ 1.11
CCDC88B-206ENST00000473405 ZNF697Q5TEC3 545 aa21.98■■□□□ 1.11
CCDC88B-206ENST00000473405 DNERQ8NFT8 737 aa21.98■■□□□ 1.11
CCDC88B-206ENST00000473405 UBAC1Q9BSL1 405 aa21.98■■□□□ 1.11
CCDC88B-206ENST00000473405 TLR3O15455 904 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-206ENST00000473405 CHMLP26374 656 aa21.97■■□□□ 1.11
CCDC88B-206ENST00000473405 PSMC6P62333 389 aa21.97■■□□□ 1.11
CCDC88B-206ENST00000473405 SEC23AQ15436 765 aa21.97■■□□□ 1.11
CCDC88B-206ENST00000473405 CYB5R4Q7L1T6 521 aa21.97■■□□□ 1.11
CCDC88B-206ENST00000473405 C16orf59Q7L2K0 433 aa21.97■■□□□ 1.11
CCDC88B-206ENST00000473405 SLC17A8Q8NDX2 589 aa21.97■■□□□ 1.11
CCDC88B-206ENST00000473405 RGS22Q8NE09 1264 aa21.97■■□□□ 1.11
CCDC88B-206ENST00000473405 ABCB11O95342 1321 aa21.97■■□□□ 1.11
CCDC88B-206ENST00000473405 REV3LO60673 3130 aa21.97■■□□□ 1.11
CCDC88B-206ENST00000473405 ZEB2O60315 1214 aa21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 PARP1P09874 1014 aaKnown RBP21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 CSF2RAP15509 400 aa21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 PTH1RQ03431 593 aa21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 PDE4DQ08499 809 aa21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 QRICH1Q2TAL8 776 aa21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 TBC1D5Q92609 795 aa21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 PPP1R12CQ9BZL4 782 aa21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 TTYH1Q9H313 450 aaPredicted RBP21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 JMJD4Q9H9V9 463 aa21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 GBF1Q92538 1859 aa21.96■■□□□ 1.11
CCDC88B-206ENST00000473405 CYP21A2P08686 494 aa21.95■■□□□ 1.1
CCDC88B-206ENST00000473405 IFIT1BQ5T764 474 aaKnown RBP21.95■■□□□ 1.1
CCDC88B-206ENST00000473405 STAG2Q8N3U4 1231 aa21.95■■□□□ 1.1
CCDC88B-206ENST00000473405 COL20A1Q9P218 1284 aa21.95■■□□□ 1.1
CCDC88B-206ENST00000473405 TAF6LQ9Y6J9 622 aa21.95■■□□□ 1.1
CCDC88B-206ENST00000473405 B4GALT4O60513 344 aa21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 CYP2C18P33260 490 aa21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 PURAQ00577 322 aaKnown RBP21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 PPIGQ13427 754 aaKnown RBP eCLIP21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 PPP2R5BQ15173 497 aa21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 SCFD2Q8WU76 684 aa21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 MPHOSPH6Q99547 160 aaKnown RBP21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 SEZ6LQ9BYH1 1024 aa21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 MAF1Q9H063 256 aa21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 TRPV6Q9H1D0 765 aa21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 SEMA6BQ9H3T3 888 aa21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 UMODL1Q5DID0 1318 aa21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 TANC1Q9C0D5 1861 aa21.94■■□□□ 1.1
CCDC88B-206ENST00000473405 ARIH2O95376 493 aa21.93■■□□□ 1.1
CCDC88B-206ENST00000473405 CPT1AP50416 773 aa21.93■■□□□ 1.1
CCDC88B-206ENST00000473405 TMEM240Q5SV17 173 aa21.93■■□□□ 1.1
CCDC88B-206ENST00000473405 RASIP1Q5U651 963 aa21.93■■□□□ 1.1
CCDC88B-206ENST00000473405 TMEM199Q8N511 208 aa21.93■■□□□ 1.1
CCDC88B-206ENST00000473405 OR6J1Q8NGC5 347 aa21.93■■□□□ 1.1
CCDC88B-206ENST00000473405 SYTL5Q8TDW5 730 aaPredicted RBP21.93■■□□□ 1.1
CCDC88B-206ENST00000473405 RUFY2Q8WXA3 655 aa21.93■■□□□ 1.1
CCDC88B-206ENST00000473405 HIPK3Q9H422 1215 aa21.93■■□□□ 1.1
CCDC88B-206ENST00000473405 MAD2L2Q9UI95 211 aa21.93■■□□□ 1.1
CCDC88B-206ENST00000473405 BAZ2BQ9UIF8 2168 aaKnown RBP21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms