RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 CCDC81Q6ZN84 652 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 ZNF654Q8IZM8 581 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 REXO1Q8N1G1 1221 aaKnown RBP6.17□□□□□ -1.42
VPS13A-210ENST00000471439 SLC9A7Q96T83 725 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 TRIT1Q9H3H1 467 aaKnown RBP6.17□□□□□ -1.42
VPS13A-210ENST00000471439 KCNK12Q9HB15 430 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 TMEM59LQ9UK28 342 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 GDNFP39905 211 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 ZC3H6P61129 1189 aaKnown RBP6.16□□□□□ -1.42
VPS13A-210ENST00000471439 PAK2Q13177 524 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 NMIQ13287 307 aaPredicted RBP6.16□□□□□ -1.42
VPS13A-210ENST00000471439 RUFY4Q6ZNE9 571 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 KIRREL1Q96J84 757 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 SLC6A18Q96N87 628 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 HDAC8Q9BY41 377 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 SP110Q9HB58 689 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 CAPN10Q9HC96 672 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 ZNRF3Q9ULT6 936 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 THSD7AQ9UPZ6 1657 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 ADGRL3Q9HAR2 1447 aa6.16□□□□□ -1.42
VPS13A-210ENST00000471439 MEIS1O00470 390 aa6.15□□□□□ -1.42
VPS13A-210ENST00000471439 ZGLP1P0C6A0 271 aa6.15□□□□□ -1.42
VPS13A-210ENST00000471439 GALK1P51570 392 aa6.15□□□□□ -1.42
VPS13A-210ENST00000471439 TEKQ02763 1124 aa6.15□□□□□ -1.42
VPS13A-210ENST00000471439 ZYXQ15942 572 aaKnown RBP6.15□□□□□ -1.42
VPS13A-210ENST00000471439 TDRD10Q5VZ19 366 aaKnown RBP6.15□□□□□ -1.42
VPS13A-210ENST00000471439 POU5F2Q8N7G0 328 aa6.15□□□□□ -1.42
VPS13A-210ENST00000471439 ORAI2Q96SN7 254 aa6.15□□□□□ -1.42
VPS13A-210ENST00000471439 PRDM14Q9GZV8 571 aa6.15□□□□□ -1.42
VPS13A-210ENST00000471439 TROQ12816 1431 aaPredicted RBP6.15□□□□□ -1.43
VPS13A-210ENST00000471439 NEXMIFQ5QGS0 1516 aa6.15□□□□□ -1.43
VPS13A-210ENST00000471439 SZT2Q5T011 3432 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 C9IYK1 514 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 TNFRSF10CO14798 259 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 CLEC3AO75596 197 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 PRAMEF1O95521 474 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 EFEMP2O95967 443 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 C8AP07357 584 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 AFMP43652 599 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 CTCFP49711 727 aaPredicted RBP6.14□□□□□ -1.43
VPS13A-210ENST00000471439 LBX1P52954 281 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 CHMP4BP1P59074 171 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 FSTL1Q12841 308 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 ZNF124Q15973 351 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 MLANAQ16655 118 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 NBPF9Q3BBW0 867 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 FBXW10Q5XX13 1052 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 ZPBP2Q6X784 338 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 PRR23BQ6ZRT6 265 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 SLC17A8Q8NDX2 589 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 KRTAP9-9Q9BYP9 154 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 KRTAP9-4Q9BYQ2 154 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 FOXP3Q9BZS1 431 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 NMRK2Q9NPI5 230 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 GINM1Q9NU53 330 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 FAM86C1Q9NVL1 165 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 C1orf167Q5SNV9 1468 aa6.14□□□□□ -1.43
VPS13A-210ENST00000471439 RGPD3A6NKT7 1758 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-210ENST00000471439 RGPD4Q7Z3J3 1758 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 LRRC10BA6NIK2 292 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 SHOXO15266 292 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 FKTNO75072 461 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 GLI1P08151 1106 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 RNF4P78317 190 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 CLEC16AQ2KHT3 1053 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 PPFIBP1Q86W92 1011 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 LSRQ86X29 649 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-210ENST00000471439 TCTN2Q96GX1 697 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 FERD3LQ96RJ6 166 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 G6PC3Q9BUM1 346 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 MKRN2Q9H000 416 aaKnown RBP6.13□□□□□ -1.43
VPS13A-210ENST00000471439 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.13□□□□□ -1.43
VPS13A-210ENST00000471439 CDK11AQ9UQ88 783 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-210ENST00000471439 INPP5FQ9Y2H2 1132 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 TBX22Q9Y458 520 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 NOS1P29475 1434 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 RPRD2Q5VT52 1461 aaKnown RBP6.13□□□□□ -1.43
VPS13A-210ENST00000471439 TRPM2O94759 1503 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 PTPN23Q9H3S7 1636 aa6.13□□□□□ -1.43
VPS13A-210ENST00000471439 CEP152O94986 1710 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 HPXP02790 462 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 GJA8P48165 433 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 MESP2Q0VG99 397 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 BBS9Q3SYG4 887 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 HABP4Q5JVS0 413 aaKnown RBP6.12□□□□□ -1.43
VPS13A-210ENST00000471439 NRAPQ86VF7 1730 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 NALCNQ8IZF0 1738 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 USHBP1Q8N6Y0 703 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 ABHD4Q8TB40 342 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 RNF32Q9H0A6 362 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 GFOD1Q9NXC2 390 aa6.12□□□□□ -1.43
VPS13A-210ENST00000471439 TULP4Q9NRJ4 1543 aa6.11□□□□□ -1.43
VPS13A-210ENST00000471439 CLIP1P30622 1438 aa6.11□□□□□ -1.43
VPS13A-210ENST00000471439 PLEKHG1Q9ULL1 1385 aa6.11□□□□□ -1.43
VPS13A-210ENST00000471439 TMEM82A0PJX8 343 aa6.11□□□□□ -1.43
VPS13A-210ENST00000471439 IGSF3O75054 1194 aa6.11□□□□□ -1.43
VPS13A-210ENST00000471439 USP2O75604 605 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-210ENST00000471439 SLC15A2Q16348 729 aa6.11□□□□□ -1.43
VPS13A-210ENST00000471439 TMEM67Q5HYA8 995 aa6.11□□□□□ -1.43
VPS13A-210ENST00000471439 MPZL3Q6UWV2 235 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms