RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 LIMCH1Q9UPQ0 1083 aa13.8□□□□□ -0.2
VPS13D-204ENST00000469054 MGAMO43451 1857 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 SOWAHBA6NEL2 793 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 OPLAHO14841 1288 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 LARGE1O95461 756 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 AKAP17AQ02040 695 aaKnown RBP13.79□□□□□ -0.2
VPS13D-204ENST00000469054 TRIM32Q13049 653 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 PFKFB3Q16875 520 aaPredicted RBP13.79□□□□□ -0.2
VPS13D-204ENST00000469054 MAMDC4Q6UXC1 1216 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 SLC30A10Q6XR72 485 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 HEATR3Q7Z4Q2 680 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 ZNF467Q7Z7K2 595 aaPredicted RBP13.79□□□□□ -0.2
VPS13D-204ENST00000469054 MSL3Q8N5Y2 521 aaKnown RBP13.79□□□□□ -0.2
VPS13D-204ENST00000469054 SAMD3Q8N6K7 520 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 SYTL5Q8TDW5 730 aaPredicted RBP13.79□□□□□ -0.2
VPS13D-204ENST00000469054 FGD4Q96M96 766 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 PURBQ96QR8 312 aaKnown RBP13.79□□□□□ -0.2
VPS13D-204ENST00000469054 TINF2Q9BSI4 451 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 SLC26A6Q9BXS9 759 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 RNF26Q9BY78 433 aaPredicted RBP13.79□□□□□ -0.2
VPS13D-204ENST00000469054 MAP3K20Q9NYL2 800 aaKnown RBP13.79□□□□□ -0.2
VPS13D-204ENST00000469054 DOCK3Q8IZD9 2030 aa13.79□□□□□ -0.2
VPS13D-204ENST00000469054 hCG_1984214I3L0E3 225 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 PPFIA3O75145 1194 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 CFBP00751 764 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 SCG2P13521 617 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 CYP2C19P33261 490 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 HSD17B4P51659 736 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 GHRHRQ02643 423 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 CACNB2Q08289 660 aaPredicted RBP13.78□□□□□ -0.2
VPS13D-204ENST00000469054 SSRP1Q08945 709 aaKnown RBP13.78□□□□□ -0.2
VPS13D-204ENST00000469054 PKN1Q16512 942 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 MAP3K21Q5TCX8 1036 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 WWC2Q6AWC2 1192 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 TRIM22Q8IYM9 498 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 ZNF713Q8N859 430 aaPredicted RBP13.78□□□□□ -0.2
VPS13D-204ENST00000469054 NECAB1Q8N987 351 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 GPKOWQ92917 476 aaPredicted RBP eCLIP13.78□□□□□ -0.2
VPS13D-204ENST00000469054 GTF3C6Q969F1 213 aa13.78□□□□□ -0.2
VPS13D-204ENST00000469054 ADD3Q9UEY8 706 aaKnown RBP13.78□□□□□ -0.2
VPS13D-204ENST00000469054 GCOM1H8Y6P7 765 aaPredicted RBP13.77□□□□□ -0.21
VPS13D-204ENST00000469054 CDKL5O76039 1030 aa13.77□□□□□ -0.21
VPS13D-204ENST00000469054 MYCP01106 439 aaPredicted RBP13.77□□□□□ -0.21
VPS13D-204ENST00000469054 POLR2MP0CAP2 368 aa13.77□□□□□ -0.21
VPS13D-204ENST00000469054 PRKAR2AP13861 404 aaKnown RBP13.77□□□□□ -0.21
VPS13D-204ENST00000469054 MTFR1Q15390 333 aa13.77□□□□□ -0.21
VPS13D-204ENST00000469054 RPTORQ8N122 1335 aa13.77□□□□□ -0.21
VPS13D-204ENST00000469054 DNERQ8NFT8 737 aa13.77□□□□□ -0.21
VPS13D-204ENST00000469054 ZSCAN31Q96LW9 406 aaPredicted RBP13.77□□□□□ -0.21
VPS13D-204ENST00000469054 SYNGAP1Q96PV0 1343 aa13.77□□□□□ -0.21
VPS13D-204ENST00000469054 PSTPIP2Q9H939 334 aa13.77□□□□□ -0.21
VPS13D-204ENST00000469054 BARHL2Q9NY43 387 aa13.77□□□□□ -0.21
VPS13D-204ENST00000469054 COL20A1Q9P218 1284 aa13.77□□□□□ -0.21
VPS13D-204ENST00000469054 PLXNB2O15031 1838 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 ASTN1O14525 1302 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 LOC102724159A0A0B4J2E5 919 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 ASB14A6NK59 587 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 STXBP3O00186 592 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 DEXIO95424 95 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 CTDNEP1O95476 244 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 SNAI1O95863 264 aaPredicted RBP13.76□□□□□ -0.21
VPS13D-204ENST00000469054 HOXA13P31271 388 aaPredicted RBP13.76□□□□□ -0.21
VPS13D-204ENST00000469054 ALDH5A1P51649 535 aaPredicted RBP13.76□□□□□ -0.21
VPS13D-204ENST00000469054 NAPAP54920 295 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 PWP2Q15269 919 aaKnown RBP13.76□□□□□ -0.21
VPS13D-204ENST00000469054 TYW1BQ6NUM6 668 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 PPP1R18Q6NYC8 613 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 ARMCX2Q7L311 632 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 CUL5Q93034 780 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 TAAR1Q96RJ0 339 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 UNC93B1Q9H1C4 597 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 HMX1Q9NP08 348 aaPredicted RBP13.76□□□□□ -0.21
VPS13D-204ENST00000469054 SH2B1Q9NRF2 756 aaPredicted RBP13.76□□□□□ -0.21
VPS13D-204ENST00000469054 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.76□□□□□ -0.21
VPS13D-204ENST00000469054 NRBP1Q9UHY1 535 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 BAZ2BQ9UIF8 2168 aaKnown RBP13.76□□□□□ -0.21
VPS13D-204ENST00000469054 ZNF236Q9UL36 1845 aa13.76□□□□□ -0.21
VPS13D-204ENST00000469054 CCDC85CA6NKD9 419 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 PIK3CDO00329 1044 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 CCL5P13501 91 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 MCM2P49736 904 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 ST3GAL1Q11201 340 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 PRAMEF19Q5SWL8 479 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 USP17L6PQ6QN14 398 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 SMARCC2Q8TAQ2 1214 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 MORC4Q8TE76 937 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 NSUN6Q8TEA1 469 aaKnown RBP13.75□□□□□ -0.21
VPS13D-204ENST00000469054 RMDN3Q96TC7 470 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 RNF208Q9H0X6 261 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 CNPY2Q9Y2B0 182 aa13.75□□□□□ -0.21
VPS13D-204ENST00000469054 STK36Q9NRP7 1315 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 SMCO2A6NFE2 343 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 B4DLN1 442 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 MEIS2O14770 477 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 CD2BP2O95400 341 aaKnown RBP13.74□□□□□ -0.21
VPS13D-204ENST00000469054 ZNF865P0CJ78 1059 aaPredicted RBP13.74□□□□□ -0.21
VPS13D-204ENST00000469054 CYBAP13498 195 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 CCND3P30281 292 aaPredicted RBP13.74□□□□□ -0.21
VPS13D-204ENST00000469054 MRPL12P52815 198 aaKnown RBP13.74□□□□□ -0.21
VPS13D-204ENST00000469054 FCHSD1Q86WN1 690 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms