RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TLR3O15455 904 aaKnown RBP19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 ZEB2O60315 1214 aa19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 GOLGA8HP0CJ92 632 aa19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 PDE4AP27815 886 aa19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 SMAD3P84022 425 aaKnown RBP19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 ZNF697Q5TEC3 545 aa19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 CXCL17Q6UXB2 119 aa19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 SLC30A10Q6XR72 485 aa19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 RNF207Q6ZRF8 634 aa19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 KIAA1211Q6ZU35 1233 aa19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 FAM126BQ8IXS8 530 aa19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 RNPC3Q96LT9 517 aaKnown RBP19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 ZSCAN10Q96SZ4 725 aaPredicted RBP19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 KAT14Q9H8E8 782 aa19.42■□□□□ 0.7
CCDC28B-204ENST00000469003 PTGS1P23219 599 aa19.41■□□□□ 0.7
CCDC28B-204ENST00000469003 CALML3P27482 149 aa19.41■□□□□ 0.7
CCDC28B-204ENST00000469003 DUSP28Q4G0W2 176 aa19.41■□□□□ 0.7
CCDC28B-204ENST00000469003 TTC22Q5TAA0 569 aa19.41■□□□□ 0.7
CCDC28B-204ENST00000469003 ENAHQ8N8S7 591 aaPredicted RBP19.41■□□□□ 0.7
CCDC28B-204ENST00000469003 SLC43A3Q8NBI5 491 aa19.41■□□□□ 0.7
CCDC28B-204ENST00000469003 SEZ6LQ9BYH1 1024 aa19.41■□□□□ 0.7
CCDC28B-204ENST00000469003 KRT23Q9C075 422 aa19.41■□□□□ 0.7
CCDC28B-204ENST00000469003 CNNM2Q9H8M5 875 aa19.41■□□□□ 0.7
CCDC28B-204ENST00000469003 ZSWIM5Q9P217 1185 aa19.41■□□□□ 0.7
CCDC28B-204ENST00000469003 EYSQ5T1H1 3165 aa19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 RBM47A0AV96 593 aaKnown RBP19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 GSPT1P15170 499 aaKnown RBP19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 RPS6P62753 249 aaKnown RBP19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 ASPRV1Q53RT3 343 aa19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 TMEM63BQ5T3F8 832 aa19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 MFSD5Q6N075 450 aa19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 DNERQ8NFT8 737 aa19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 MPHOSPH6Q99547 160 aaKnown RBP19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 UBA5Q9GZZ9 404 aa19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 IL25Q9H293 177 aa19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 CPVLQ9H3G5 476 aa19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 TNKSO95271 1327 aa19.4■□□□□ 0.7
CCDC28B-204ENST00000469003 CD4P01730 458 aa19.39■□□□□ 0.69
CCDC28B-204ENST00000469003 PPIGQ13427 754 aaKnown RBP eCLIP19.39■□□□□ 0.69
CCDC28B-204ENST00000469003 ITGA7Q13683 1181 aa19.39■□□□□ 0.69
CCDC28B-204ENST00000469003 USH1GQ495M9 461 aa19.39■□□□□ 0.69
CCDC28B-204ENST00000469003 RGS22Q8NE09 1264 aa19.39■□□□□ 0.69
CCDC28B-204ENST00000469003 WDR11Q9BZH6 1224 aa19.39■□□□□ 0.69
CCDC28B-204ENST00000469003 MAF1Q9H063 256 aa19.39■□□□□ 0.69
CCDC28B-204ENST00000469003 RAD50Q92878 1312 aa19.39■□□□□ 0.69
CCDC28B-204ENST00000469003 EDNRBP24530 442 aa19.38■□□□□ 0.69
CCDC28B-204ENST00000469003 PDE4DQ08499 809 aa19.38■□□□□ 0.69
CCDC28B-204ENST00000469003 CDC37Q16543 378 aaPredicted RBP19.38■□□□□ 0.69
CCDC28B-204ENST00000469003 ADGRF4Q8IZF3 695 aa19.38■□□□□ 0.69
CCDC28B-204ENST00000469003 TTC28Q96AY4 2481 aa19.38■□□□□ 0.69
CCDC28B-204ENST00000469003 UBAC1Q9BSL1 405 aa19.38■□□□□ 0.69
CCDC28B-204ENST00000469003 PRUNE2Q8WUY3 3088 aa19.38■□□□□ 0.69
CCDC28B-204ENST00000469003 GRIN2DO15399 1336 aa19.37■□□□□ 0.69
CCDC28B-204ENST00000469003 ABCB11O95342 1321 aa19.37■□□□□ 0.69
CCDC28B-204ENST00000469003 B4DLN1 442 aa19.37■□□□□ 0.69
CCDC28B-204ENST00000469003 PARP1P09874 1014 aaKnown RBP19.37■□□□□ 0.69
CCDC28B-204ENST00000469003 MRPL12P52815 198 aaKnown RBP19.37■□□□□ 0.69
CCDC28B-204ENST00000469003 TMEM199Q8N511 208 aa19.37■□□□□ 0.69
CCDC28B-204ENST00000469003 PPP1R12CQ9BZL4 782 aa19.37■□□□□ 0.69
CCDC28B-204ENST00000469003 SEMA6BQ9H3T3 888 aa19.37■□□□□ 0.69
CCDC28B-204ENST00000469003 MYH6P13533 1939 aa19.37■□□□□ 0.69
CCDC28B-204ENST00000469003 NKRFO15226 690 aaKnown RBP eCLIP19.36■□□□□ 0.69
CCDC28B-204ENST00000469003 RUFY2Q8WXA3 655 aa19.36■□□□□ 0.69
CCDC28B-204ENST00000469003 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.36■□□□□ 0.69
CCDC28B-204ENST00000469003 POLR3EQ9NVU0 708 aa19.36■□□□□ 0.69
CCDC28B-204ENST00000469003 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 CSF2RAP15509 400 aa19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 CPT1AP50416 773 aa19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 PSMC6P62333 389 aa19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 PPP2R5BQ15173 497 aa19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 QRICH1Q2TAL8 776 aa19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 TMEM240Q5SV17 173 aa19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 IFIT1BQ5T764 474 aaKnown RBP19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 OR6J1Q8NGC5 347 aa19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 SCFD2Q8WU76 684 aa19.35■□□□□ 0.69
CCDC28B-204ENST00000469003 TMEM265A0A087WTH1 108 aa19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 DHX16O60231 1041 aaKnown RBP19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 CHMLP26374 656 aa19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 CYP2C18P33260 490 aa19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 IRX6P78412 446 aaPredicted RBP19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 SEC23AQ15436 765 aa19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 CYB5R4Q7L1T6 521 aa19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 C16orf59Q7L2K0 433 aa19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 FBXO11Q86XK2 927 aa19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 MCF2L2Q86YR7 1114 aa19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 MAFAQ8NHW3 353 aaPredicted RBP19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 TTYH1Q9H313 450 aaPredicted RBP19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 HIPK3Q9H422 1215 aa19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 JMJD4Q9H9V9 463 aa19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 MRPL11Q9Y3B7 192 aaKnown RBP19.34■□□□□ 0.69
CCDC28B-204ENST00000469003 B4GALT4O60513 344 aa19.33■□□□□ 0.68
CCDC28B-204ENST00000469003 PURAQ00577 322 aaKnown RBP19.33■□□□□ 0.68
CCDC28B-204ENST00000469003 TRDNQ13061 729 aa19.33■□□□□ 0.68
CCDC28B-204ENST00000469003 BRDTQ58F21 947 aaPredicted RBP19.33■□□□□ 0.68
CCDC28B-204ENST00000469003 PSRC1Q6PGN9 363 aaPredicted RBP19.33■□□□□ 0.68
CCDC28B-204ENST00000469003 SYTL5Q8TDW5 730 aaPredicted RBP19.33■□□□□ 0.68
CCDC28B-204ENST00000469003 TBC1D5Q92609 795 aa19.33■□□□□ 0.68
CCDC28B-204ENST00000469003 CDX2Q99626 313 aaPredicted RBP19.33■□□□□ 0.68
CCDC28B-204ENST00000469003 TRPV6Q9H1D0 765 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms