RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 TP53I13Q8NBR0 393 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 FGD4Q96M96 766 aa6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 MCMBPQ9BTE3 642 aa6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 BCAS3Q9H6U6 928 aa6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 FAN1Q9Y2M0 1017 aa6.81□□□□□ -1.32
CCDC88A-210ENST00000468534 ATF2P15336 505 aa6.8□□□□□ -1.32
CCDC88A-210ENST00000468534 EIF6P56537 245 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-210ENST00000468534 FOXO4P98177 505 aa6.8□□□□□ -1.32
CCDC88A-210ENST00000468534 NLGN1Q8N2Q7 840 aa6.8□□□□□ -1.32
CCDC88A-210ENST00000468534 CXorf38Q8TB03 319 aa6.8□□□□□ -1.32
CCDC88A-210ENST00000468534 LUC7LQ9NQ29 371 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-210ENST00000468534 WHRNQ9P202 907 aa6.8□□□□□ -1.32
CCDC88A-210ENST00000468534 SUSD2Q9UGT4 822 aa6.8□□□□□ -1.32
CCDC88A-210ENST00000468534 DIS3Q9Y2L1 958 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-210ENST00000468534 RWDD3Q9Y3V2 267 aa6.8□□□□□ -1.32
CCDC88A-210ENST00000468534 ARID4BQ4LE39 1312 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 A0A1B0GTL3 188 aa6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 RECKO95980 971 aa6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 PLA2G1BP04054 148 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 CORO7P57737 925 aa6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 PPP2R5EQ16537 467 aa6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 SKOR2Q2VWA4 1001 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 ZNF654Q8IZM8 581 aa6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 ALG3Q92685 438 aa6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 GBP3Q9H0R5 595 aa6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 PMF1-BGLAPU3KQ54 211 aa6.79□□□□□ -1.32
CCDC88A-210ENST00000468534 A0A087WZG4 1122 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 AURKAO14965 403 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 EPHX1P07099 455 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 CELA3BP08861 270 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 FBLN1P23142 703 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 CANXP27824 592 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 KCNC1P48547 511 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 SEPHS1P49903 392 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 SLURP1P55000 103 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 SLC7A5Q01650 507 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 EEF1DP3Q658K8 133 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 RCSD1Q6JBY9 416 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 PRRT2Q7Z6L0 340 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 CABP7Q86V35 215 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 KLHL25Q9H0H3 589 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 FBLN5Q9UBX5 448 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 SUGT1Q9Y2Z0 365 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 SLC12A7Q9Y666 1083 aa6.78□□□□□ -1.32
CCDC88A-210ENST00000468534 A0A1W2PQH9 124 aa6.77□□□□□ -1.33
CCDC88A-210ENST00000468534 SCAMP3O14828 347 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-210ENST00000468534 PPM1BO75688 479 aa6.77□□□□□ -1.33
CCDC88A-210ENST00000468534 COL9A2Q14055 689 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-210ENST00000468534 ERICH6BQ5W0A0 696 aa6.77□□□□□ -1.33
CCDC88A-210ENST00000468534 CPNE8Q86YQ8 564 aa6.77□□□□□ -1.33
CCDC88A-210ENST00000468534 FNIP1Q8TF40 1166 aa6.77□□□□□ -1.33
CCDC88A-210ENST00000468534 PHAXQ9H814 394 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-210ENST00000468534 GULP1Q9UBP9 304 aa6.77□□□□□ -1.33
CCDC88A-210ENST00000468534 CGGBP1Q9UFW8 167 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-210ENST00000468534 C2orf71A6NGG8 1288 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 ASGR2P07307 311 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 GLI4P10075 376 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 SOX9P48436 509 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 VWA3BQ502W6 1294 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 LZTR1Q8N653 840 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 USP33Q8TEY7 942 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 GPRASP2Q96D09 838 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 PKNOX2Q96KN3 472 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 TEPSINQ96N21 525 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 SPATA25Q9BR10 227 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 BDH2Q9BUT1 245 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 BACE2Q9Y5Z0 518 aa6.76□□□□□ -1.33
CCDC88A-210ENST00000468534 NCAM1P13591 858 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 PMLP29590 882 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 GIPRP48546 466 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 AMPD2Q01433 879 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 C9orf131Q5VYM1 1079 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 FRMD5Q7Z6J6 570 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 NLGN2Q8NFZ4 835 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 ZNF526Q8TF50 670 aaPredicted RBP6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 KLHL6Q8WZ60 621 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 KRTAP4-5Q9BYR2 181 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 RNF38Q9H0F5 515 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 USP40Q9NVE5 1235 aa6.75□□□□□ -1.33
CCDC88A-210ENST00000468534 PRICKLE3O43900 615 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-210ENST00000468534 NASPP49321 788 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-210ENST00000468534 NT5DC1Q5TFE4 455 aa6.74□□□□□ -1.33
CCDC88A-210ENST00000468534 TMED8Q6PL24 325 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-210ENST00000468534 LIPIQ6XZB0 460 aa6.74□□□□□ -1.33
CCDC88A-210ENST00000468534 METTL16Q86W50 562 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-210ENST00000468534 C19orf47Q8N9M1 422 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-210ENST00000468534 CPLX3Q8WVH0 158 aa6.74□□□□□ -1.33
CCDC88A-210ENST00000468534 SPATA32Q96LK8 384 aa6.74□□□□□ -1.33
CCDC88A-210ENST00000468534 IGSF5Q9NSI5 407 aa6.74□□□□□ -1.33
CCDC88A-210ENST00000468534 CADPSQ9ULU8 1353 aa6.73□□□□□ -1.33
CCDC88A-210ENST00000468534 NPHP3-ACAD11A0A0J9YXS1 232 aa6.73□□□□□ -1.33
CCDC88A-210ENST00000468534 PPP1R11O60927 126 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-210ENST00000468534 PAMP19021 973 aa6.73□□□□□ -1.33
CCDC88A-210ENST00000468534 PLP2Q04941 152 aa6.73□□□□□ -1.33
CCDC88A-210ENST00000468534 RTP5Q14D33 572 aa6.73□□□□□ -1.33
CCDC88A-210ENST00000468534 KIAA1211LQ6NV74 962 aa6.73□□□□□ -1.33
CCDC88A-210ENST00000468534 OR6P1Q8NGX9 317 aa6.73□□□□□ -1.33
CCDC88A-210ENST00000468534 NUDT5Q9UKK9 219 aa6.73□□□□□ -1.33
CCDC88A-210ENST00000468534 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-210ENST00000468534 IRX6P78412 446 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms