RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SGPL1O95470 568 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 CFBP00751 764 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 GJB1P08034 283 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 SMARCA1P28370 1054 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 HOXA13P31271 388 aaPredicted RBP13.5□□□□□ -0.25
CUX1-207ENST00000465461 AK2P54819 239 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 CACNB1Q02641 598 aaPredicted RBP13.5□□□□□ -0.25
CUX1-207ENST00000465461 FUT2Q10981 343 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 ARMCX2Q7L311 632 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 EEPD1Q7L9B9 569 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 GPKOWQ92917 476 aaPredicted RBP eCLIP13.5□□□□□ -0.257e-6■□□□□ 8.1
CUX1-207ENST00000465461 TAAR1Q96RJ0 339 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 C22orf23Q9BZE7 217 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.5□□□□□ -0.25
CUX1-207ENST00000465461 PNMA2Q9UL42 364 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 V9GY48 417 aaPredicted RBP13.5□□□□□ -0.25
CUX1-207ENST00000465461 CENPFP49454 3210 aa13.5□□□□□ -0.25
CUX1-207ENST00000465461 MCM3APO60318 1980 aa13.49□□□□□ -0.25
CUX1-207ENST00000465461 TFRCP02786 760 aaKnown RBP13.49□□□□□ -0.25
CUX1-207ENST00000465461 GJA8P48165 433 aa13.49□□□□□ -0.25
CUX1-207ENST00000465461 ALDH5A1P51649 535 aaPredicted RBP13.49□□□□□ -0.25
CUX1-207ENST00000465461 NEK4P51957 841 aa13.49□□□□□ -0.25
CUX1-207ENST00000465461 EVCP57679 992 aa13.49□□□□□ -0.25
CUX1-207ENST00000465461 MAMDC4Q6UXC1 1216 aa13.49□□□□□ -0.25
CUX1-207ENST00000465461 SYTL5Q8TDW5 730 aaPredicted RBP13.49□□□□□ -0.25
CUX1-207ENST00000465461 PHKBQ93100 1093 aa13.49□□□□□ -0.25
CUX1-207ENST00000465461 LENG1Q96BZ8 264 aaPredicted RBP13.49□□□□□ -0.25
CUX1-207ENST00000465461 IL17RAQ96F46 866 aa13.49□□□□□ -0.25
CUX1-207ENST00000465461 KIF2CQ99661 725 aa13.49□□□□□ -0.25
CUX1-207ENST00000465461 SEC63Q9UGP8 760 aaKnown RBP13.49□□□□□ -0.25
CUX1-207ENST00000465461 ZHX1Q9UKY1 873 aaPredicted RBP13.49□□□□□ -0.25
CUX1-207ENST00000465461 TPCN1Q9ULQ1 816 aa13.49□□□□□ -0.25
CUX1-207ENST00000465461 ZNF865P0CJ78 1059 aaPredicted RBP13.48□□□□□ -0.25
CUX1-207ENST00000465461 PTGS1P23219 599 aa13.48□□□□□ -0.25
CUX1-207ENST00000465461 LHX8Q68G74 356 aa13.48□□□□□ -0.25
CUX1-207ENST00000465461 HEATR3Q7Z4Q2 680 aa13.48□□□□□ -0.25
CUX1-207ENST00000465461 ZNF467Q7Z7K2 595 aaPredicted RBP13.48□□□□□ -0.25
CUX1-207ENST00000465461 MCF2L2Q86YR7 1114 aa13.48□□□□□ -0.25
CUX1-207ENST00000465461 ZFP91Q96JP5 570 aaPredicted RBP13.48□□□□□ -0.25
CUX1-207ENST00000465461 DDX20Q9UHI6 824 aaKnown RBP13.48□□□□□ -0.25
CUX1-207ENST00000465461 SYNGAP1Q96PV0 1343 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 LARGE1O95461 756 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 MYCNP04198 464 aaPredicted RBP13.47□□□□□ -0.25
CUX1-207ENST00000465461 RCAN1P53805 252 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 ACVR2BQ13705 512 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 NTRK3Q16288 839 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 TMEM63BQ5T3F8 832 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 WWC2Q6AWC2 1192 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 TYW1BQ6NUM6 668 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 FCHSD1Q86WN1 690 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 FBXO16Q8IX29 292 aaPredicted RBP13.47□□□□□ -0.25
CUX1-207ENST00000465461 RGS22Q8NE09 1264 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 ZNF274Q96GC6 653 aaPredicted RBP13.47□□□□□ -0.25
CUX1-207ENST00000465461 KATNBL1Q9H079 304 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 CRISPLD2Q9H0B8 497 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 PDGFCQ9NRA1 345 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 CNPY2Q9Y2B0 182 aa13.47□□□□□ -0.25
CUX1-207ENST00000465461 KIAA0100Q14667 2235 aaKnown RBP13.47□□□□□ -0.25
CUX1-207ENST00000465461 RBBP6Q7Z6E9 1792 aaKnown RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 CCDC196A0A1B0GTZ2 297 aa13.46□□□□□ -0.25
CUX1-207ENST00000465461 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 ASB14A6NK59 587 aa13.46□□□□□ -0.25
CUX1-207ENST00000465461 GCOM1H8Y6P7 765 aaPredicted RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 SEPT4O43236 478 aa13.46□□□□□ -0.25
CUX1-207ENST00000465461 ADCY6O43306 1168 aa13.46□□□□□ -0.25
CUX1-207ENST00000465461 POLR2MP0CAP2 368 aa13.46□□□□□ -0.25
CUX1-207ENST00000465461 EIF2AK2P19525 551 aaKnown RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 HOXD11P31277 338 aaPredicted RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 RBM25P49756 843 aaKnown RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 HSD17B4P51659 736 aa13.46□□□□□ -0.25
CUX1-207ENST00000465461 IRX5P78411 483 aaPredicted RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 SCRN1Q12765 414 aa13.46□□□□□ -0.25
CUX1-207ENST00000465461 USP17L6PQ6QN14 398 aa13.46□□□□□ -0.25
CUX1-207ENST00000465461 MSL3Q8N5Y2 521 aaKnown RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 NECAB1Q8N987 351 aa13.46□□□□□ -0.25
CUX1-207ENST00000465461 DIS3LQ8TF46 1054 aaKnown RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 SLC26A6Q9BXS9 759 aa13.46□□□□□ -0.25
CUX1-207ENST00000465461 ALDH8A1Q9H2A2 487 aaPredicted RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 ADD3Q9UEY8 706 aaKnown RBP13.46□□□□□ -0.25
CUX1-207ENST00000465461 NID2Q14112 1375 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 ADAMTS3O15072 1205 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 ADCYAP1R1P41586 468 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 MNX1P50219 401 aaPredicted RBP13.45□□□□□ -0.26
CUX1-207ENST00000465461 PKN1Q16512 942 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 UBE2SQ16763 222 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 ME3Q16798 604 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 CCDC144BQ3MJ40 725 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 ARHGEF16Q5VV41 709 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 RMDN3Q96TC7 470 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 BACH2Q9BYV9 841 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 SLKQ9H2G2 1235 aaPredicted RBP13.45□□□□□ -0.26
CUX1-207ENST00000465461 ABHD16BQ9H3Z7 469 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 OGDHLQ9ULD0 1010 aa13.45□□□□□ -0.26
CUX1-207ENST00000465461 STXBP3O00186 592 aa13.44□□□□□ -0.26
CUX1-207ENST00000465461 MEIS2O14770 477 aa13.44□□□□□ -0.26
CUX1-207ENST00000465461 PRPF3O43395 683 aaKnown RBP13.44□□□□□ -0.26
CUX1-207ENST00000465461 PGK1P00558 417 aa13.44□□□□□ -0.26
CUX1-207ENST00000465461 RGS19P49795 217 aa13.44□□□□□ -0.26
CUX1-207ENST00000465461 NAPAP54920 295 aa13.44□□□□□ -0.26
CUX1-207ENST00000465461 PDE4DQ08499 809 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms