RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 RILPL2Q969X0 211 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 TIFAQ96CG3 184 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 PBX4Q9BYU1 374 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 HIPK3Q9H422 1215 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 ADD3Q9UEY8 706 aaKnown RBP18.95■□□□□ 0.62
COL7A1-204ENST00000462475 Q9Y3F1 56 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 CHD9Q3L8U1 2897 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 NEDD4P46934 1319 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 ZEB2O60315 1214 aa18.94■□□□□ 0.62
COL7A1-204ENST00000462475 B4GALT4O60513 344 aa18.94■□□□□ 0.62
COL7A1-204ENST00000462475 SNHG28P0DPA3 235 aa18.94■□□□□ 0.62
COL7A1-204ENST00000462475 DUSP28Q4G0W2 176 aa18.94■□□□□ 0.62
COL7A1-204ENST00000462475 B4GALNT3Q6L9W6 998 aa18.94■□□□□ 0.62
COL7A1-204ENST00000462475 MFSD6Q6ZSS7 791 aa18.94■□□□□ 0.62
COL7A1-204ENST00000462475 TRPV6Q9H1D0 765 aa18.94■□□□□ 0.62
COL7A1-204ENST00000462475 ZNF576Q9H609 170 aa18.94■□□□□ 0.62
COL7A1-204ENST00000462475 IL23AQ9NPF7 189 aa18.94■□□□□ 0.62
COL7A1-204ENST00000462475 PCP11498 1178 aaKnown RBP18.93■□□□□ 0.62
COL7A1-204ENST00000462475 CALML3P27482 149 aa18.93■□□□□ 0.62
COL7A1-204ENST00000462475 SMC5Q8IY18 1101 aa18.93■□□□□ 0.62
COL7A1-204ENST00000462475 NOC4LQ9BVI4 516 aaKnown RBP18.93■□□□□ 0.62
COL7A1-204ENST00000462475 WDR11Q9BZH6 1224 aa18.93■□□□□ 0.62
COL7A1-204ENST00000462475 CXXC1Q9P0U4 656 aaPredicted RBP18.93■□□□□ 0.62
COL7A1-204ENST00000462475 SDSP20132 328 aa18.92■□□□□ 0.62
COL7A1-204ENST00000462475 CCL23P55773 120 aa18.92■□□□□ 0.62
COL7A1-204ENST00000462475 RNF207Q6ZRF8 634 aa18.92■□□□□ 0.62
COL7A1-204ENST00000462475 USP38Q8NB14 1042 aa18.92■□□□□ 0.62
COL7A1-204ENST00000462475 TTC14Q96N46 770 aa18.92■□□□□ 0.62
COL7A1-204ENST00000462475 ZKSCAN3Q9BRR0 538 aa18.92■□□□□ 0.62
COL7A1-204ENST00000462475 WNT8AQ9H1J5 351 aa18.92■□□□□ 0.62
COL7A1-204ENST00000462475 WDR19Q8NEZ3 1342 aa18.92■□□□□ 0.62
COL7A1-204ENST00000462475 LOC102724159A0A0B4J2E5 919 aa18.91■□□□□ 0.62
COL7A1-204ENST00000462475 RBM47A0AV96 593 aaKnown RBP18.91■□□□□ 0.62
COL7A1-204ENST00000462475 GOLGA8HP0CJ92 632 aa18.91■□□□□ 0.62
COL7A1-204ENST00000462475 RPS6P62753 249 aaKnown RBP18.91■□□□□ 0.62
COL7A1-204ENST00000462475 PWP2Q15269 919 aaKnown RBP18.91■□□□□ 0.62
COL7A1-204ENST00000462475 PLEKHM2Q8IWE5 1019 aa18.91■□□□□ 0.62
COL7A1-204ENST00000462475 HERVK_113Q902F9 699 aa18.91■□□□□ 0.62
COL7A1-204ENST00000462475 ESR2Q92731 530 aa18.91■□□□□ 0.62
COL7A1-204ENST00000462475 SEZ6LQ9BYH1 1024 aa18.91■□□□□ 0.62
COL7A1-204ENST00000462475 ALDH8A1Q9H2A2 487 aaPredicted RBP18.91■□□□□ 0.62
COL7A1-204ENST00000462475 CPVLQ9H3G5 476 aa18.91■□□□□ 0.62
COL7A1-204ENST00000462475 RNF41Q9H4P4 317 aaPredicted RBP18.91■□□□□ 0.62
COL7A1-204ENST00000462475 EDNRBP24530 442 aa18.9■□□□□ 0.62
COL7A1-204ENST00000462475 PURAQ00577 322 aaKnown RBP18.9■□□□□ 0.62
COL7A1-204ENST00000462475 CHD1LQ86WJ1 897 aa18.9■□□□□ 0.62
COL7A1-204ENST00000462475 OR6J1Q8NGC5 347 aa18.9■□□□□ 0.62
COL7A1-204ENST00000462475 PNMA2Q9UL42 364 aa18.9■□□□□ 0.62
COL7A1-204ENST00000462475 IGHDP01880 384 aa18.89■□□□□ 0.61
COL7A1-204ENST00000462475 FGBP02675 491 aa18.89■□□□□ 0.61
COL7A1-204ENST00000462475 MYL3P08590 195 aa18.89■□□□□ 0.61
COL7A1-204ENST00000462475 MFAP1P55081 439 aaKnown RBP18.89■□□□□ 0.61
COL7A1-204ENST00000462475 PDE4DQ08499 809 aa18.89■□□□□ 0.61
COL7A1-204ENST00000462475 USH1GQ495M9 461 aa18.89■□□□□ 0.61
COL7A1-204ENST00000462475 GPATCH4Q5T3I0 446 aaKnown RBP18.89■□□□□ 0.61
COL7A1-204ENST00000462475 CWC27Q6UX04 472 aaKnown RBP18.89■□□□□ 0.61
COL7A1-204ENST00000462475 OTOP2Q7RTS6 562 aa18.89■□□□□ 0.61
COL7A1-204ENST00000462475 VWCEQ96DN2 955 aa18.89■□□□□ 0.61
COL7A1-204ENST00000462475 UBA5Q9GZZ9 404 aa18.89■□□□□ 0.61
COL7A1-204ENST00000462475 RWDD1Q9H446 243 aaPredicted RBP18.89■□□□□ 0.61
COL7A1-204ENST00000462475 OSBPL3Q9H4L5 887 aa18.89■□□□□ 0.61
COL7A1-204ENST00000462475 TRMT13Q9NUP7 481 aaKnown RBP18.89■□□□□ 0.61
COL7A1-204ENST00000462475 POLR3EQ9NVU0 708 aa18.89■□□□□ 0.61
COL7A1-204ENST00000462475 CHD7Q9P2D1 2997 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 ZNF213O14771 459 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 KDM4AO75164 1064 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 CYP2C9P11712 490 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 CPT1AP50416 773 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 NUCB1Q02818 461 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 AAMPQ13685 434 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 PPP2R5BQ15173 497 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 DGKHQ86XP1 1220 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 PPP1R13LQ8WUF5 828 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 COPS5Q92905 334 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 SCLYQ96I15 445 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 PRDM12Q9H4Q4 367 aa18.88■□□□□ 0.61
COL7A1-204ENST00000462475 TNKSO95271 1327 aa18.87■□□□□ 0.61
COL7A1-204ENST00000462475 RAB30Q15771 203 aa18.87■□□□□ 0.61
COL7A1-204ENST00000462475 LAMA4Q16363 1823 aa18.87■□□□□ 0.61
COL7A1-204ENST00000462475 PNMA1Q8ND90 353 aa18.87■□□□□ 0.61
COL7A1-204ENST00000462475 DNERQ8NFT8 737 aa18.87■□□□□ 0.61
COL7A1-204ENST00000462475 MTG1Q9BT17 334 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-204ENST00000462475 MTIF3Q9H2K0 278 aaKnown RBP18.87■□□□□ 0.61
COL7A1-204ENST00000462475 DIAPH3Q9NSV4 1193 aa18.87■□□□□ 0.61
COL7A1-204ENST00000462475 YBX2Q9Y2T7 364 aaKnown RBP18.87■□□□□ 0.61
COL7A1-204ENST00000462475 B4E1Z4 1266 aa18.86■□□□□ 0.61
COL7A1-204ENST00000462475 ARIH2O95376 493 aa18.86■□□□□ 0.61
COL7A1-204ENST00000462475 CDC37Q16543 378 aaPredicted RBP18.86■□□□□ 0.61
COL7A1-204ENST00000462475 SCFD2Q8WU76 684 aa18.86■□□□□ 0.61
COL7A1-204ENST00000462475 YTHDC1Q96MU7 727 aaKnown RBP18.86■□□□□ 0.61
COL7A1-204ENST00000462475 MPHOSPH6Q99547 160 aaKnown RBP18.86■□□□□ 0.61
COL7A1-204ENST00000462475 NKX2-4Q9H2Z4 354 aa18.86■□□□□ 0.61
COL7A1-204ENST00000462475 MSRAQ9UJ68 235 aa18.86■□□□□ 0.61
COL7A1-204ENST00000462475 NKRFO15226 690 aaKnown RBP eCLIP18.85■□□□□ 0.61
COL7A1-204ENST00000462475 ADGRE1Q14246 886 aa18.85■□□□□ 0.61
COL7A1-204ENST00000462475 FAM47CQ5HY64 1035 aa18.85■□□□□ 0.61
COL7A1-204ENST00000462475 IQCA1Q86XH1 822 aa18.85■□□□□ 0.61
COL7A1-204ENST00000462475 ENAHQ8N8S7 591 aaPredicted RBP18.85■□□□□ 0.61
COL7A1-204ENST00000462475 EXOC6Q8TAG9 804 aa18.85■□□□□ 0.61
COL7A1-204ENST00000462475 TBC1D5Q92609 795 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms