RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 RSPO2Q6UXX9 243 aaPredicted RBP6.07□□□□□ -1.44
VPS41-210ENST00000462429 CEP128Q6ZU80 1094 aa6.07□□□□□ -1.44
VPS41-210ENST00000462429 CPNE8Q86YQ8 564 aa6.07□□□□□ -1.44
VPS41-210ENST00000462429 ZFYVE21Q9BQ24 234 aa6.07□□□□□ -1.44
VPS41-210ENST00000462429 SLKQ9H2G2 1235 aaPredicted RBP6.07□□□□□ -1.44
VPS41-210ENST00000462429 RC3H2Q9HBD1 1191 aaKnown RBP6.07□□□□□ -1.44
VPS41-210ENST00000462429 SFMBT1Q9UHJ3 866 aa6.07□□□□□ -1.44
VPS41-210ENST00000462429 ADAMTS6Q9UKP5 1117 aa6.07□□□□□ -1.44
VPS41-210ENST00000462429 A0A1W2PQ27 194 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 A0A1W2PQ64 194 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 A0A1W2PQC6 194 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 A0A1W2PQD8 194 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 BLACEA4D250 179 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 WTIPA6NIX2 430 aaPredicted RBP6.06□□□□□ -1.44
VPS41-210ENST00000462429 AQP7O14520 342 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 PPP1R12AO14974 1030 aaPredicted RBP6.06□□□□□ -1.44
VPS41-210ENST00000462429 NPHS1O60500 1241 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 EFCAB14O75071 495 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 C6orf222P0C671 652 aaPredicted RBP6.06□□□□□ -1.44
VPS41-210ENST00000462429 RTP1P59025 263 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 FNDC3BQ53EP0 1204 aaKnown RBP6.06□□□□□ -1.44
VPS41-210ENST00000462429 EGFLAMQ63HQ2 1017 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 STYK1Q6J9G0 422 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 KIAA0907Q7Z7F0 614 aaPredicted RBP6.06□□□□□ -1.44
VPS41-210ENST00000462429 SLCO6A1Q86UG4 719 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 PHF20Q9BVI0 1012 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 GPR27Q9NS67 375 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 EBF1Q9UH73 591 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 NDOR1Q9UHB4 597 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 TMEFF2Q9UIK5 374 aaPredicted RBP6.06□□□□□ -1.44
VPS41-210ENST00000462429 NPFFR2Q9Y5X5 522 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 TAF6LQ9Y6J9 622 aa6.06□□□□□ -1.44
VPS41-210ENST00000462429 HPXP02790 462 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 NAT1P18440 290 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 GTF2A2P52657 109 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 NR0B2Q15466 257 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 HSF5Q4G112 596 aaPredicted RBP6.05□□□□□ -1.44
VPS41-210ENST00000462429 TRIM61Q5EBN2 209 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 GALNT18Q6P9A2 607 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 CCDC103Q8IW40 242 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 ABI1Q8IZP0 508 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 FAM177A1Q8N128 213 aaPredicted RBP6.05□□□□□ -1.44
VPS41-210ENST00000462429 LILRA2Q8N149 483 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 JMJD8Q96S16 334 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 C19orf73Q9NVV2 129 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 CTNND2Q9UQB3 1225 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 PLAAQ9Y263 795 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 CD2APQ9Y5K6 639 aa6.05□□□□□ -1.44
VPS41-210ENST00000462429 TIMM13Q9Y5L4 95 aaPredicted RBP6.05□□□□□ -1.44
VPS41-210ENST00000462429 C7orf72A4D263 438 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 ARNTLO00327 626 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 NRDCO43847 1150 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 RFPL3O75679 317 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 RAPGEF3O95398 923 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 AFMP43652 599 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 CEBPAP49715 358 aaPredicted RBP6.04□□□□□ -1.44
VPS41-210ENST00000462429 CORO7P57737 925 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 GPR85P60893 370 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 RPL11P62913 178 aaKnown RBP6.04□□□□□ -1.44
VPS41-210ENST00000462429 INF2Q27J81 1249 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 TKFCQ3LXA3 575 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 KCNT2Q6UVM3 1135 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 NBPF11Q86T75 865 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 IFNL3Q8IZI9 196 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 RCBTB1Q8NDN9 531 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 MYLIPQ8WY64 445 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 SLC52A2Q9HAB3 445 aa6.04□□□□□ -1.44
VPS41-210ENST00000462429 KCNQ2O43526 872 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 PABPC4Q13310 644 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS41-210ENST00000462429 CBX2Q14781 532 aaPredicted RBP6.03□□□□□ -1.44
VPS41-210ENST00000462429 SNX17Q15036 470 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 MBLAC2Q68D91 279 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 GSTCDQ8NEC7 633 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 FLAD1Q8NFF5 587 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 NLGN2Q8NFZ4 835 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS41-210ENST00000462429 NINJ1Q92982 152 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 ASIC4Q96FT7 647 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 IMPACTQ9P2X3 320 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 GPR160Q9UJ42 338 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 TRAF6Q9Y4K3 522 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 PCDHA2Q9Y5H9 948 aa6.03□□□□□ -1.44
VPS41-210ENST00000462429 LCP1P13796 627 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 GYS2P54840 703 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 ERVFC1P60507 584 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 KIZQ2M2Z5 673 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 LBX2Q6XYB7 198 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 MTDHQ86UE4 582 aaKnown RBP6.02□□□□□ -1.45
VPS41-210ENST00000462429 NIM1KQ8IY84 436 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 NUP43Q8NFH3 380 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 ABHD4Q8TB40 342 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 SLC7A14Q8TBB6 771 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 CHAMP1Q96JM3 812 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 MAGEB10Q96LZ2 347 aaPredicted RBP6.02□□□□□ -1.45
VPS41-210ENST00000462429 ALG1Q9BT22 464 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 TMX1Q9H3N1 280 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 C19orf44Q9H6X5 657 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 ACSL6Q9UKU0 697 aa6.02□□□□□ -1.45
VPS41-210ENST00000462429 OAS3Q9Y6K5 1087 aaKnown RBP6.02□□□□□ -1.45
VPS41-210ENST00000462429 ASXL2Q76L83 1435 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms