RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 HYOU1Q9Y4L1 999 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 GOLGA6L7A0A1B0GV03 622 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 SLC1A4P43007 532 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 PAFAH1B1P43034 410 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 FUT2Q10981 343 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 TICAM2Q86XR7 235 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 GPKOWQ92917 476 aaPredicted RBP eCLIP12.99□□□□□ -0.33
CPSF3-202ENST00000460593 TNFRSF25Q93038 417 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 TPX2Q9ULW0 747 aaKnown RBP12.99□□□□□ -0.33
CPSF3-202ENST00000460593 LAMB4A4D0S4 1761 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 RGPD5Q99666 1765 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 DCDC2CA8MYV0 355 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 CLGNO14967 610 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 STK4Q13043 487 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 CYB5D1Q6P9G0 228 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 CCDC121Q6ZUS5 278 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 RRAGAQ7L523 313 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 ADGRA1Q86SQ6 560 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 SPATA5Q8NB90 893 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 VEZTQ9HBM0 779 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 PKD1L3Q7Z443 1732 aa12.99□□□□□ -0.33
CPSF3-202ENST00000460593 KLRC4O43908 158 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 USO1O60763 962 aaKnown RBP12.98□□□□□ -0.33
CPSF3-202ENST00000460593 CDR1P51861 262 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 SMTNP53814 917 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 HLTFQ14527 1009 aaKnown RBP eCLIP12.98□□□□□ -0.33
CPSF3-202ENST00000460593 ACCSLQ4AC99 568 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 MIIPQ5JXC2 388 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 STAG1Q8WVM7 1258 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 CAVIN3Q969G5 261 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 TMEM60Q9H2L4 133 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 AKAP11Q9UKA4 1901 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 FAM205AQ6ZU69 1335 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 PSMA7O14818 248 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 EEF1GP26641 437 aaKnown RBP12.98□□□□□ -0.33
CPSF3-202ENST00000460593 MAGEA1P43355 309 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 ITGB3BPQ13352 177 aaPredicted RBP12.98□□□□□ -0.33
CPSF3-202ENST00000460593 KLHDC7AQ5VTJ3 777 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 MICALCLQ6ZW33 695 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 LPIN2Q92539 896 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 ATP6V1G3Q96LB4 118 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 SPEF2Q9C093 1822 aa12.98□□□□□ -0.33
CPSF3-202ENST00000460593 LRRC53A6NM62 1247 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 SEC23AQ15436 765 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 KRT28Q7Z3Y7 464 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 PARP9Q8IXQ6 854 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 CCDC170Q8IYT3 715 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 SRBD1Q8N5C6 995 aaKnown RBP12.97□□□□□ -0.33
CPSF3-202ENST00000460593 ISCA1Q9BUE6 129 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 RMND1Q9NWS8 449 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 KCNG1Q9UIX4 513 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 TJP1Q07157 1748 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 ABCC12Q96J65 1359 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 PHF20L1A8MW92 1017 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 PDE8BO95263 885 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 CLNS1AP54105 237 aaKnown RBP12.97□□□□□ -0.33
CPSF3-202ENST00000460593 ARID5AQ03989 594 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 SNCBQ16143 134 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 IFIT1BQ5T764 474 aaKnown RBP12.97□□□□□ -0.33
CPSF3-202ENST00000460593 NAIF1Q69YI7 327 aaPredicted RBP12.97□□□□□ -0.33
CPSF3-202ENST00000460593 FUKQ8N0W3 1084 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 KANSL2Q9H9L4 492 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 NLRC4Q9NPP4 1024 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 CNOT8Q9UFF9 292 aaKnown RBP12.97□□□□□ -0.33
CPSF3-202ENST00000460593 FAM107AO95990 144 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 BCAMP50895 628 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 MAP3K12Q12852 859 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 ALX1Q15699 326 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 IFT20Q8IY31 132 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 VGLL2Q8N8G2 317 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 THAP9Q9H5L6 903 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 DISC1Q9NRI5 854 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 MYH7P12883 1935 aa12.97□□□□□ -0.33
CPSF3-202ENST00000460593 RAD51CO43502 376 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 KIF1CO43896 1103 aaKnown RBP12.96□□□□□ -0.33
CPSF3-202ENST00000460593 TCP1P17987 556 aaKnown RBP12.96□□□□□ -0.33
CPSF3-202ENST00000460593 TDRD12Q587J7 1177 aaKnown RBP12.96□□□□□ -0.33
CPSF3-202ENST00000460593 FAXDC2Q96IV6 333 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 ALS2CR12Q96Q35 445 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 PALMO75781 387 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 FLT3P36888 993 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 EHHADHQ08426 723 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 PDE4DQ08499 809 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 NAA25Q14CX7 972 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 ODF2Q5BJF6 829 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 FAM47AQ5JRC9 791 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 C6orf89Q6UWU4 347 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 THEMISQ8N1K5 641 aaPredicted RBP12.96□□□□□ -0.33
CPSF3-202ENST00000460593 SLC39A2Q9NP94 309 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 A1CFQ9NQ94 594 aaKnown RBP12.96□□□□□ -0.33
CPSF3-202ENST00000460593 ABCF2Q9UG63 623 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 LEMD3Q9Y2U8 911 aa12.96□□□□□ -0.33
CPSF3-202ENST00000460593 SLIT3O75094 1523 aa12.96□□□□□ -0.34
CPSF3-202ENST00000460593 ANKRD18BA2A2Z9 1011 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 WTIPA6NIX2 430 aaPredicted RBP12.95□□□□□ -0.34
CPSF3-202ENST00000460593 EIF4E1BA6NMX2 242 aaKnown RBP12.95□□□□□ -0.34
CPSF3-202ENST00000460593 PRPF3O43395 683 aaKnown RBP12.95□□□□□ -0.34
CPSF3-202ENST00000460593 CSF1RP07333 972 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 MDM1Q8TC05 714 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 NACAP1Q9BZK3 213 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms