RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 ESR2Q92731 530 aa13.23□□□□□ -0.29
SYNE2-207ENST00000458046 STAMQ92783 540 aa13.23□□□□□ -0.29
SYNE2-207ENST00000458046 FAM53CQ9NYF3 392 aa13.23□□□□□ -0.29
SYNE2-207ENST00000458046 TRIM75PA6NK02 468 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 PLEKHA8P1O95397 391 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 ATP6V1AP38606 617 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 MTF1Q14872 753 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 KARSQ15046 597 aaKnown RBP13.22□□□□□ -0.29
SYNE2-207ENST00000458046 SEC23AQ15436 765 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 PKN1Q16512 942 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 ENAHQ8N8S7 591 aaPredicted RBP13.22□□□□□ -0.29
SYNE2-207ENST00000458046 PRPF38AQ8NAV1 312 aaKnown RBP13.22□□□□□ -0.29
SYNE2-207ENST00000458046 PPM1EQ8WY54 764 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 NELL1Q92832 810 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 FAM126AQ9BYI3 521 aaPredicted RBP13.22□□□□□ -0.29
SYNE2-207ENST00000458046 STX10O60499 249 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 CASQ1P31415 396 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 ATICP31939 592 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 CRKLP46109 303 aaKnown RBP13.22□□□□□ -0.29
SYNE2-207ENST00000458046 PSMC1P62191 440 aaKnown RBP13.22□□□□□ -0.29
SYNE2-207ENST00000458046 VAC14Q08AM6 782 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 WASHC5Q12768 1159 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 TERF2Q15554 542 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 ZNF174Q15697 407 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 PGBD3Q8N328 593 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 CCDC89Q8N998 374 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 RNPC3Q96LT9 517 aaKnown RBP13.22□□□□□ -0.29
SYNE2-207ENST00000458046 TMUB1Q9BVT8 246 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 CCSER2Q9H7U1 834 aa13.22□□□□□ -0.29
SYNE2-207ENST00000458046 SLC26A4O43511 780 aa13.21□□□□□ -0.29
SYNE2-207ENST00000458046 CD44P16070 742 aaKnown RBP13.21□□□□□ -0.29
SYNE2-207ENST00000458046 PLCD1P51178 756 aa13.21□□□□□ -0.29
SYNE2-207ENST00000458046 RAPGEF1Q13905 1077 aa13.21□□□□□ -0.29
SYNE2-207ENST00000458046 NR1I3Q14994 352 aa13.21□□□□□ -0.29
SYNE2-207ENST00000458046 FCHSD1Q86WN1 690 aa13.21□□□□□ -0.29
SYNE2-207ENST00000458046 GEMIN8Q9NWZ8 242 aaKnown RBP13.21□□□□□ -0.29
SYNE2-207ENST00000458046 NID2Q14112 1375 aa13.21□□□□□ -0.29
SYNE2-207ENST00000458046 EVX2Q03828 476 aa13.21□□□□□ -0.3
SYNE2-207ENST00000458046 IFIT1BQ5T764 474 aaKnown RBP13.21□□□□□ -0.3
SYNE2-207ENST00000458046 SYMPKQ92797 1274 aaKnown RBP13.21□□□□□ -0.3
SYNE2-207ENST00000458046 ZSCAN10Q96SZ4 725 aaPredicted RBP13.21□□□□□ -0.3
SYNE2-207ENST00000458046 RNF26Q9BY78 433 aaPredicted RBP13.21□□□□□ -0.3
SYNE2-207ENST00000458046 IRX2Q9BZI1 471 aaPredicted RBP13.21□□□□□ -0.3
SYNE2-207ENST00000458046 CCDC87Q9NVE4 849 aa13.21□□□□□ -0.3
SYNE2-207ENST00000458046 FHOD1Q9Y613 1164 aa13.21□□□□□ -0.3
SYNE2-207ENST00000458046 ECM29Q5VYK3 1845 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 TADA3O75528 432 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 XBP1P17861 261 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 KRT2P35908 639 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 Q3C1V9 767 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 TRIML1Q8N9V2 468 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 SPATA20Q8TB22 786 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 PAGE5Q96GU1 130 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 MRPS23Q9Y3D9 190 aaKnown RBP13.2□□□□□ -0.3
SYNE2-207ENST00000458046 SEC31AO94979 1220 aaKnown RBP13.2□□□□□ -0.3
SYNE2-207ENST00000458046 CAMTA2O94983 1202 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 LMBRD2Q68DH5 695 aaPredicted RBP13.2□□□□□ -0.3
SYNE2-207ENST00000458046 CATIPQ7Z7H3 387 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 PHF20Q9BVI0 1012 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 CICQ96RK0 1608 aaPredicted RBP13.2□□□□□ -0.3
SYNE2-207ENST00000458046 NUP98P52948 1817 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 MYH3P11055 1940 aa13.2□□□□□ -0.3
SYNE2-207ENST00000458046 PES1O00541 588 aaKnown RBP13.19□□□□□ -0.3
SYNE2-207ENST00000458046 XRCC5P13010 732 aaKnown RBP13.19□□□□□ -0.3
SYNE2-207ENST00000458046 PEX19P40855 299 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 TMCO3Q6UWJ1 677 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 RIOK1Q9BRS2 568 aaKnown RBP13.19□□□□□ -0.3
SYNE2-207ENST00000458046 TGIF2Q9GZN2 237 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 RANBP17Q9H2T7 1088 aaKnown RBP13.19□□□□□ -0.3
SYNE2-207ENST00000458046 AATFQ9NY61 560 aaKnown RBP eCLIP13.19□□□□□ -0.3
SYNE2-207ENST00000458046 ANAPC4Q9UJX5 808 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 A0A0U1RQJ8 604 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 A0A1B0GTH6 734 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 ERICH4A6NGS2 130 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 EFCAB8A8MWE9 144 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 AKR1B15C9JRZ8 316 aaPredicted RBP13.19□□□□□ -0.3
SYNE2-207ENST00000458046 NMT2O60551 498 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 NTSR2O95665 410 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 PNMA6AP0CW24 399 aaPredicted RBP13.19□□□□□ -0.3
SYNE2-207ENST00000458046 TRAPPC10P48553 1259 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 FUT2Q10981 343 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 TMEM95Q3KNT9 176 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 ATRIPQ8WXE1 791 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 SRRTQ9BXP5 876 aaKnown RBP13.19□□□□□ -0.3
SYNE2-207ENST00000458046 MRPL44Q9H9J2 332 aaKnown RBP13.19□□□□□ -0.3
SYNE2-207ENST00000458046 LZTFL1Q9NQ48 299 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 COL14A1Q05707 1796 aaKnown RBP13.19□□□□□ -0.3
SYNE2-207ENST00000458046 ITGB4P16144 1822 aa13.19□□□□□ -0.3
SYNE2-207ENST00000458046 MAP3K9P80192 1104 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 MFSD4BQ5TF39 518 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 PRPF38BQ5VTL8 546 aaKnown RBP13.18□□□□□ -0.3
SYNE2-207ENST00000458046 SPATA1Q5VX52 437 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 ALKBH2Q6NS38 261 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 C3orf67Q6ZVT6 689 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 OGFOD1Q8N543 542 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 SAMD3Q8N6K7 520 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 BLZF1Q9H2G9 400 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 POLG2Q9UHN1 485 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 RTL9Q8NET4 1388 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 A6NJY4 79 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms