RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 SLC38A10Q9HBR0 1119 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 RNF186Q9NXI6 227 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 PNMA2Q9UL42 364 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 PRR12Q9ULL5 1215 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 PCDHGC3Q9UN70 934 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 RABGAP1Q9Y3P9 1069 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 MCM3APO60318 1980 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 CPLX1O14810 134 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 ATP2A1O14983 1001 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 CDKL5O76039 1030 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 PLEKHA8P1O95397 391 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 CDC27P30260 824 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 SLC16A2P36021 539 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 STK3Q13188 491 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 CDC37Q16543 378 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-214ENST00000454018 ME3Q16798 604 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 CPLX2Q6PUV4 134 aaKnown RBP10.15□□□□□ -0.78
SYNE1-214ENST00000454018 RDH13Q8NBN7 331 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 SLC39A7Q92504 469 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 RANBP17Q9H2T7 1088 aaKnown RBP10.15□□□□□ -0.78
SYNE1-214ENST00000454018 RIOX1Q9H6W3 641 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 MORF4L1Q9UBU8 362 aa10.15□□□□□ -0.78
SYNE1-214ENST00000454018 CTDP1Q9Y5B0 961 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-214ENST00000454018 HOXA2O43364 376 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 ZBED4O75132 1171 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 TRPA1O75762 1119 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 CD2BP2O95400 341 aaKnown RBP10.14□□□□□ -0.79
SYNE1-214ENST00000454018 LARGE1O95461 756 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 BCRP11274 1271 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 COPB2P35606 906 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 CCT2P78371 535 aaKnown RBP10.14□□□□□ -0.79
SYNE1-214ENST00000454018 SCRN1Q12765 414 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 NOM1Q5C9Z4 860 aaKnown RBP10.14□□□□□ -0.79
SYNE1-214ENST00000454018 ADGRF4Q8IZF3 695 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 ANKRD13CQ8N6S4 541 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 REPS2Q8NFH8 660 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 LRRN4Q8WUT4 740 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 MTMR8Q96EF0 704 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 PAGR1Q9BTK6 254 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 TEX13BQ9BXU2 312 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 UBA5Q9GZZ9 404 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 CPVLQ9H3G5 476 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 NCOA5Q9HCD5 579 aaKnown RBP10.14□□□□□ -0.79
SYNE1-214ENST00000454018 WBP1LQ9NX94 342 aa10.14□□□□□ -0.79
SYNE1-214ENST00000454018 SEC63Q9UGP8 760 aaKnown RBP10.14□□□□□ -0.79
SYNE1-214ENST00000454018 ZNF214Q9UL59 606 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-214ENST00000454018 LRRC37A2A6NM11 1700 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 ZBTB5O15062 677 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 CYTH3O43739 400 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 ICAM1P05362 532 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 IFNAR1P17181 557 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 ADD1P35611 737 aaKnown RBP10.13□□□□□ -0.79
SYNE1-214ENST00000454018 ERVK-9P63128 1117 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 ERVK-24P63145 666 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 CCNA1P78396 465 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 GUCA2AQ02747 115 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 FUT2Q10981 343 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 TRAF1Q13077 416 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 NTRK3Q16288 839 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 C17orf99Q6UX52 265 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 NBPF11Q86T75 865 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 TRIM22Q8IYM9 498 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 SRBD1Q8N5C6 995 aaKnown RBP10.13□□□□□ -0.79
SYNE1-214ENST00000454018 GPRC5AQ8NFJ5 357 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 PRR7Q8TB68 274 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 EPS8L1Q8TE68 723 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 SNX21Q969T3 373 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 RRP36Q96EU6 259 aaKnown RBP10.13□□□□□ -0.79
SYNE1-214ENST00000454018 RNF26Q9BY78 433 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-214ENST00000454018 SPATC1LQ9H0A9 340 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 JMJD4Q9H9V9 463 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 TXNRD2Q9NNW7 524 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 CPA4Q9UI42 421 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 STK36Q9NRP7 1315 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 MYH7BA7E2Y1 1941 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 MYH15Q9Y2K3 1946 aa10.13□□□□□ -0.79
SYNE1-214ENST00000454018 PNMA6FA0A0J9YX94 578 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 hCG_1984214I3L0E3 225 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 CNMDO75829 334 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 ATG7O95352 703 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 TBC1D8O95759 1140 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 TMEM132BQ14DG7 1078 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 SLC35G1Q2M3R5 365 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 QRICH1Q2TAL8 776 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 SNRNP48Q6IEG0 339 aaKnown RBP10.12□□□□□ -0.79
SYNE1-214ENST00000454018 POTEEQ6S8J3 1075 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 HOMER1Q86YM7 354 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 HSCBQ8IWL3 235 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 ZNF713Q8N859 430 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-214ENST00000454018 TATDN2Q93075 761 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 HLA-CQ95604 372 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 TMX3Q96JJ7 454 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 BTBD7Q9P203 1132 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 RBPJLQ9UBG7 517 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 CCPG1Q9ULG6 757 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 KIAA1217Q5T5P2 1943 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 ZNF536O15090 1300 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 K7ELQ4 463 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-214ENST00000454018 SLC25A27O95847 323 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 C7P10643 843 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms