RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 KLHL14Q9P2G3 628 aa6.14□□□□□ -1.43
USP40-209ENST00000452724 SUSD5O60279 629 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 PPM1BO75688 479 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 EPHB3P54753 998 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 CORO7P57737 925 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 CBX2Q14781 532 aaPredicted RBP6.13□□□□□ -1.43
USP40-209ENST00000452724 KIR3DS1Q14943 382 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 EEPD1Q7L9B9 569 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 TMEM52Q8NDY8 209 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 ADCY4Q8NFM4 1077 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 ZDHHC15Q96MV8 337 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 APBA2Q99767 749 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 KRTAP4-7Q9BYR0 210 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 PARD6AQ9NPB6 346 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 APEX2Q9UBZ4 518 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 MSRB2Q9Y3D2 182 aa6.13□□□□□ -1.43
USP40-209ENST00000452724 CCDC85CA6NKD9 419 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 BMP7P18075 431 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 MAPKAPK2P49137 400 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 AFF3P51826 1226 aaKnown RBP6.12□□□□□ -1.43
USP40-209ENST00000452724 CDR1P51861 262 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 CTSWP56202 376 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 PPP2R5DQ14738 602 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 LCE4AQ5TA78 99 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 EEF1DP3Q658K8 133 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 ZC3H14Q6PJT7 736 aaKnown RBP6.12□□□□□ -1.43
USP40-209ENST00000452724 LDHDQ86WU2 507 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 PTCHD1Q96NR3 888 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 FCRL3Q96P31 734 aaPredicted RBP6.12□□□□□ -1.43
USP40-209ENST00000452724 OSBPL2Q9H1P3 480 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 EPN3Q9H201 632 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 PDLIM7Q9NR12 457 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 SUGT1Q9Y2Z0 365 aa6.12□□□□□ -1.43
USP40-209ENST00000452724 IRS4O14654 1257 aaPredicted RBP6.11□□□□□ -1.43
USP40-209ENST00000452724 SASH1O94885 1247 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 CYBBP04839 570 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 PFKLP17858 780 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 MVKQ03426 396 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 SLC10A6Q3KNW5 377 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 SV2CQ496J9 727 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 BICRALQ6AI39 1079 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 CNKSR3Q6P9H4 555 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 PAQR3Q6TCH7 311 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 RPTNQ6XPR3 784 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 ZNF513Q8N8E2 541 aaPredicted RBP6.11□□□□□ -1.43
USP40-209ENST00000452724 RCC1LQ96I51 464 aaKnown RBP6.11□□□□□ -1.43
USP40-209ENST00000452724 LNPKQ9C0E8 428 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 CCDC113Q9H0I3 377 aa6.11□□□□□ -1.43
USP40-209ENST00000452724 PDPK1O15530 556 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 SRGAP3O43295 1099 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 L1CAMP32004 1257 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 CEBPAP49715 358 aaPredicted RBP6.1□□□□□ -1.43
USP40-209ENST00000452724 RASGRF1Q13972 1273 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 RASA3Q14644 834 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 TARBP2Q15633 366 aaKnown RBP6.1□□□□□ -1.43
USP40-209ENST00000452724 PLEKHN1Q494U1 663 aaPredicted RBP6.1□□□□□ -1.43
USP40-209ENST00000452724 RCSD1Q6JBY9 416 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 CABP7Q86V35 215 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 NLGN1Q8N2Q7 840 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 ARHGEF39Q8N4T4 335 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 BVESQ8NE79 360 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 ST13P5Q8NFI4 369 aaPredicted RBP6.1□□□□□ -1.43
USP40-209ENST00000452724 MKL1Q969V6 931 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 PPP1R14AQ96A00 147 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 DACT3Q96B18 629 aaPredicted RBP6.1□□□□□ -1.43
USP40-209ENST00000452724 DEPDC7Q96QD5 511 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 SNTG2Q9NY99 539 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 CGGBP1Q9UFW8 167 aaPredicted RBP6.1□□□□□ -1.43
USP40-209ENST00000452724 DBR1Q9UK59 544 aaKnown RBP6.1□□□□□ -1.43
USP40-209ENST00000452724 AKT3Q9Y243 479 aa6.1□□□□□ -1.43
USP40-209ENST00000452724 NOP56O00567 594 aaKnown RBP6.09□□□□□ -1.43
USP40-209ENST00000452724 IFNGR1P15260 489 aa6.09□□□□□ -1.43
USP40-209ENST00000452724 HOXA5P20719 270 aa6.09□□□□□ -1.43
USP40-209ENST00000452724 SEPHS1P49903 392 aa6.09□□□□□ -1.43
USP40-209ENST00000452724 CCDC144BQ3MJ40 725 aa6.09□□□□□ -1.43
USP40-209ENST00000452724 DPH6Q7L8W6 267 aa6.09□□□□□ -1.43
USP40-209ENST00000452724 LRP10Q7Z4F1 713 aa6.09□□□□□ -1.43
USP40-209ENST00000452724 CRACR2BQ8N4Y2 399 aaPredicted RBP6.09□□□□□ -1.43
USP40-209ENST00000452724 PANK1Q8TE04 598 aa6.09□□□□□ -1.43
USP40-209ENST00000452724 SRPK1Q96SB4 655 aaKnown RBP6.09□□□□□ -1.43
USP40-209ENST00000452724 ZSWIM4Q9H7M6 989 aa6.09□□□□□ -1.43
USP40-209ENST00000452724 LRP2BPQ9P2M1 347 aa6.09□□□□□ -1.43
USP40-209ENST00000452724 EMC9Q9Y3B6 208 aa6.09□□□□□ -1.43
USP40-209ENST00000452724 TRBV23OR9-2A0A075B6M9 112 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 FAM221BA6H8Z2 402 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 AGRPO00253 132 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 AURKAO14965 403 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 BUB1BO60566 1050 aaPredicted RBP6.08□□□□□ -1.44
USP40-209ENST00000452724 IGSF3O75054 1194 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 ITGAVP06756 1048 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 DBHP09172 617 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 AMPD2Q01433 879 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 GRB10Q13322 594 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 BMS1Q14692 1282 aaKnown RBP6.08□□□□□ -1.44
USP40-209ENST00000452724 NFE2L2Q16236 605 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 MTERF2Q49AM1 385 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 POMZP3Q6PJE2 187 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 ZNF227Q86WZ6 799 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 FAM129CQ86XR2 697 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 IGDCC3Q8IVU1 814 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms