RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CUEDC2Q9H467 287 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 PDE11AQ9HCR9 933 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 TCP11L1Q9NUJ3 509 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 BARHL2Q9NY43 387 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 ZNF219Q9P2Y4 722 aaPredicted RBP18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 NAV1Q8NEY1 1877 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 FLT1P17948 1338 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 CYTH3O43739 400 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 EIF3JO75822 258 aaKnown RBP18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 DNM2P50570 870 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 WDR93Q6P2C0 686 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 CNKSR1Q969H4 720 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 DHTKD1Q96HY7 919 aaPredicted RBP18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 TTYH3Q9C0H2 523 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 MAGEC2Q9UBF1 373 aaPredicted RBP18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 GUCA1BQ9UMX6 200 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 LDHBP07195 334 aaKnown RBP18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 MCM6Q14566 821 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 GRIK5Q16478 980 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 SLC4A8Q2Y0W8 1093 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 NCAPH2Q6IBW4 605 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 DYNLL2Q96FJ2 89 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 DUSP9Q99956 384 aaKnown RBP18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 ZC3H12CQ9C0D7 883 aaKnown RBP18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 ADAM21Q9UKJ8 722 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 C10orf71Q711Q0 1435 aa18.35■□□□□ 0.53
CLCNKA-203ENST00000439316 ZBTB7AO95365 584 aa18.34■□□□□ 0.53
CLCNKA-203ENST00000439316 HEATR3Q7Z4Q2 680 aa18.34■□□□□ 0.53
CLCNKA-203ENST00000439316 EXOC1Q9NV70 894 aa18.34■□□□□ 0.53
CLCNKA-203ENST00000439316 USP17L3A6NCW0 530 aa18.33■□□□□ 0.53
CLCNKA-203ENST00000439316 USP17L4A6NCW7 530 aa18.33■□□□□ 0.53
CLCNKA-203ENST00000439316 PALM3A6NDB9 673 aaPredicted RBP18.33■□□□□ 0.53
CLCNKA-203ENST00000439316 B4DLN1 442 aa18.33■□□□□ 0.53
CLCNKA-203ENST00000439316 GYS2P54840 703 aa18.33■□□□□ 0.53
CLCNKA-203ENST00000439316 TSR1Q2NL82 804 aaKnown RBP18.33■□□□□ 0.53
CLCNKA-203ENST00000439316 USP17L1Q7RTZ2 530 aa18.33■□□□□ 0.53
CLCNKA-203ENST00000439316 RETREG2Q8NC44 543 aa18.33■□□□□ 0.53
CLCNKA-203ENST00000439316 AK8Q96MA6 479 aa18.33■□□□□ 0.53
CLCNKA-203ENST00000439316 SUGCTQ9HAC7 445 aa18.33■□□□□ 0.53
CLCNKA-203ENST00000439316 CCNE1P24864 410 aa18.33■□□□□ 0.52
CLCNKA-203ENST00000439316 KRT83P78385 493 aa18.33■□□□□ 0.52
CLCNKA-203ENST00000439316 CASP8Q14790 479 aa18.33■□□□□ 0.52
CLCNKA-203ENST00000439316 PAPD7Q5XG87 772 aaKnown RBP18.33■□□□□ 0.52
CLCNKA-203ENST00000439316 P2RX5Q93086 422 aa18.33■□□□□ 0.52
CLCNKA-203ENST00000439316 TUBGCP2Q9BSJ2 902 aa18.33■□□□□ 0.52
CLCNKA-203ENST00000439316 NUP58Q9BVL2 599 aa18.33■□□□□ 0.52
CLCNKA-203ENST00000439316 RASSF10A6NK89 507 aa18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 PES1O00541 588 aaKnown RBP18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 PLCG1P19174 1290 aa18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 CABP7Q86V35 215 aa18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 CSGALNACT2Q8N6G5 542 aa18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 EHBP1Q8NDI1 1231 aa18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 SH3RF3Q8TEJ3 882 aaPredicted RBP18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 PLIN2Q99541 437 aa18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 LZTS2Q9BRK4 669 aa18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 COA1Q9GZY4 146 aa18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 MKNK2Q9HBH9 465 aa18.32■□□□□ 0.52
CLCNKA-203ENST00000439316 BICDL2A1A5D9 508 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 ATP1A1P05023 1023 aaKnown RBP18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 OR52Z1P0C646 297 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 TSPY3P0CV98 308 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 TSPY8P0CW00 308 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 DOK7Q18PE1 504 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 CCDC122Q5T0U0 273 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 C7orf43Q8WVR3 580 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 C7orf25Q9BPX7 421 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 SPZ1Q9BXG8 430 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 TRIM9Q9C026 710 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 ZMYND12Q9H0C1 365 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 TULP2O00295 520 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 CYLC1P35663 651 aaPredicted RBP18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 PPP1R2P41236 205 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 USP14P54578 494 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 GTF2IP78347 998 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 ZBED6P86452 979 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 DIXDC1Q155Q3 683 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 MFSD14BQ5SR56 506 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 KRT25Q7Z3Z0 450 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 FAM114A1Q8IWE2 563 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 CCDC47Q96A33 483 aaKnown RBP18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 JAKMIP2Q96AA8 810 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 TMEM47Q9BQJ4 181 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 HDAC6Q9UBN7 1215 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 ATF5Q9Y2D1 282 aaPredicted RBP18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 SAR1BQ9Y6B6 198 aa18.31■□□□□ 0.52
CLCNKA-203ENST00000439316 EIF3CLB5ME19 914 aaKnown RBP18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 ENC1O14682 589 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 COBLL1Q53SF7 1204 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 KIAA1328Q86T90 577 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 AMOTL1Q8IY63 956 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 CCDC170Q8IYT3 715 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 CNOT6LQ96LI5 555 aaKnown RBP18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 EYA3Q99504 573 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 EIF3CQ99613 913 aaKnown RBP18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 AGPAT5Q9NUQ2 364 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 VPS18Q9P253 973 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 SNED1Q8TER0 1413 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 KRT86O43790 486 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 N4BP1O75113 896 aaKnown RBP18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 TRIM21P19474 475 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 723.9 ms