RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-204	ENST00000431283	KIAA1211L	Q6NV74	962 aa		7.77	□□□□□ -1.17
PTPN4-204	ENST00000431283	VHLL	Q6RSH7	139 aa		7.77	□□□□□ -1.17
PTPN4-204	ENST00000431283	LZTR1	Q8N653	840 aa		7.77	□□□□□ -1.17
PTPN4-204	ENST00000431283	RCC1L	Q96I51	464 aa	Known RBP	7.77	□□□□□ -1.17
PTPN4-204	ENST00000431283	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	7.77	□□□□□ -1.17
PTPN4-204	ENST00000431283	NPHP3-ACAD11	A0A0J9YXS1	232 aa		7.76	□□□□□ -1.17
PTPN4-204	ENST00000431283	ZC3H12D	A2A288	527 aa	Known RBP	7.76	□□□□□ -1.17
PTPN4-204	ENST00000431283	PAM	P19021	973 aa		7.76	□□□□□ -1.17
PTPN4-204	ENST00000431283	POMZP3	Q6PJE2	187 aa		7.76	□□□□□ -1.17
PTPN4-204	ENST00000431283	ARHGEF39	Q8N4T4	335 aa		7.76	□□□□□ -1.17
PTPN4-204	ENST00000431283	LINC01356	Q8N9X3	169 aa		7.76	□□□□□ -1.17
PTPN4-204	ENST00000431283	ANAPC16	Q96DE5	110 aa		7.76	□□□□□ -1.17
PTPN4-204	ENST00000431283	SHD	Q96IW2	340 aa		7.76	□□□□□ -1.17
PTPN4-204	ENST00000431283	TGIF2	Q9GZN2	237 aa		7.76	□□□□□ -1.17
PTPN4-204	ENST00000431283	AKT3	Q9Y243	479 aa		7.76	□□□□□ -1.17
PTPN4-204	ENST00000431283	NOP56	O00567	594 aa	Known RBP	7.75	□□□□□ -1.17
PTPN4-204	ENST00000431283	LIMS1	P48059	325 aa		7.75	□□□□□ -1.17
PTPN4-204	ENST00000431283	CASP7	P55210	303 aa		7.75	□□□□□ -1.17
PTPN4-204	ENST00000431283	KLHL6	Q8WZ60	621 aa		7.75	□□□□□ -1.17
PTPN4-204	ENST00000431283	ALG3	Q92685	438 aa		7.75	□□□□□ -1.17
PTPN4-204	ENST00000431283	PPP1R14A	Q96A00	147 aa		7.75	□□□□□ -1.17
PTPN4-204	ENST00000431283	APBA2	Q99767	749 aa		7.75	□□□□□ -1.17
PTPN4-204	ENST00000431283	RNF38	Q9H0F5	515 aa		7.75	□□□□□ -1.17
PTPN4-204	ENST00000431283	RWDD3	Q9Y3V2	267 aa		7.75	□□□□□ -1.17
PTPN4-204	ENST00000431283	IRS2	Q9Y4H2	1338 aa		7.75	□□□□□ -1.17
PTPN4-204	ENST00000431283	NCAM1	P13591	858 aa		7.74	□□□□□ -1.17
PTPN4-204	ENST00000431283	PEX11G	Q96HA9	241 aa		7.74	□□□□□ -1.17
PTPN4-204	ENST00000431283	C20orf173	Q96LM9	149 aa		7.74	□□□□□ -1.17
PTPN4-204	ENST00000431283	MCMBP	Q9BTE3	642 aa		7.74	□□□□□ -1.17
PTPN4-204	ENST00000431283	HCFC2	Q9Y5Z7	792 aa		7.74	□□□□□ -1.17
PTPN4-204	ENST00000431283	KRTAP9-7	A8MTY7	169 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	NPHS1	O60500	1241 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	KCNH1	O95259	989 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	SYN1	P17600	705 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	NCAPH	Q15003	741 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	VPS37D	Q86XT2	251 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	CPNE8	Q86YQ8	564 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	ZDHHC14	Q8IZN3	488 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	KRTAP4-9	Q9BYQ8	210 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	ACBD3	Q9H3P7	528 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	LUC7L	Q9NQ29	371 aa	Known RBP	7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	RTEL1	Q9NZ71	1219 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	SUSD2	Q9UGT4	822 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283	PMF1-BGLAP	U3KQ54	211 aa		7.73	□□□□□ -1.17
PTPN4-204	ENST00000431283		A0A0G2JLL6	359 aa	Predicted RBP	7.72	□□□□□ -1.17
PTPN4-204	ENST00000431283	FOXD2	O60548	495 aa	Predicted RBP	7.72	□□□□□ -1.17
PTPN4-204	ENST00000431283	GLI4	P10075	376 aa		7.72	□□□□□ -1.17
PTPN4-204	ENST00000431283	IGFBP6	P24592	240 aa	Predicted RBP	7.72	□□□□□ -1.17
PTPN4-204	ENST00000431283	FOXO4	P98177	505 aa		7.72	□□□□□ -1.17
PTPN4-204	ENST00000431283	TRIM26	Q12899	539 aa	Predicted RBP	7.72	□□□□□ -1.17
PTPN4-204	ENST00000431283	SLC9A5	Q14940	896 aa		7.72	□□□□□ -1.17
PTPN4-204	ENST00000431283	FEZF2	Q8TBJ5	459 aa		7.72	□□□□□ -1.17
PTPN4-204	ENST00000431283	CAPN10	Q9HC96	672 aa		7.72	□□□□□ -1.17
PTPN4-204	ENST00000431283	GULP1	Q9UBP9	304 aa		7.72	□□□□□ -1.17
PTPN4-204	ENST00000431283	OTOL1	A6NHN0	477 aa	Predicted RBP	7.71	□□□□□ -1.18
PTPN4-204	ENST00000431283	ZNF143	P52747	638 aa	Predicted RBP	7.71	□□□□□ -1.18
PTPN4-204	ENST00000431283	NETO2	Q8NC67	525 aa		7.71	□□□□□ -1.18
PTPN4-204	ENST00000431283	BVES	Q8NE79	360 aa		7.71	□□□□□ -1.18
PTPN4-204	ENST00000431283	XYLT2	Q9H1B5	865 aa		7.71	□□□□□ -1.18
PTPN4-204	ENST00000431283	RXFP1	Q9HBX9	757 aa		7.71	□□□□□ -1.18
PTPN4-204	ENST00000431283	ZBTB7A	O95365	584 aa		7.7	□□□□□ -1.18
PTPN4-204	ENST00000431283	SSB	P05455	408 aa	Known RBP eCLIP	7.7	□□□□□ -1.18
PTPN4-204	ENST00000431283	KCNC1	P48547	511 aa		7.7	□□□□□ -1.18
PTPN4-204	ENST00000431283	CAP1	Q01518	475 aa		7.7	□□□□□ -1.18
PTPN4-204	ENST00000431283	GNL2	Q13823	731 aa	Known RBP	7.7	□□□□□ -1.18
PTPN4-204	ENST00000431283	TSPAN17	Q96FV3	270 aa		7.7	□□□□□ -1.18
PTPN4-204	ENST00000431283	CLEC1B	Q9P126	229 aa		7.7	□□□□□ -1.18
PTPN4-204	ENST00000431283	KIAA1522	Q9P206	1035 aa	Predicted RBP	7.7	□□□□□ -1.18
PTPN4-204	ENST00000431283	ASGR2	P07307	311 aa		7.69	□□□□□ -1.18
PTPN4-204	ENST00000431283	BUD31	P41223	144 aa	Predicted RBP	7.69	□□□□□ -1.18
PTPN4-204	ENST00000431283	SCRN1	Q12765	414 aa		7.69	□□□□□ -1.18
PTPN4-204	ENST00000431283	WWC2	Q6AWC2	1192 aa		7.69	□□□□□ -1.18
PTPN4-204	ENST00000431283	FAM169B	Q8N8A8	192 aa		7.69	□□□□□ -1.18
PTPN4-204	ENST00000431283	SYT8	Q8NBV8	401 aa		7.69	□□□□□ -1.18
PTPN4-204	ENST00000431283	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	7.69	□□□□□ -1.18
PTPN4-204	ENST00000431283	APEX2	Q9UBZ4	518 aa		7.69	□□□□□ -1.18
PTPN4-204	ENST00000431283	EMC9	Q9Y3B6	208 aa		7.69	□□□□□ -1.18
PTPN4-204	ENST00000431283	C7orf72	A4D263	438 aa		7.68	□□□□□ -1.18
PTPN4-204	ENST00000431283	FUCA1	P04066	466 aa		7.68	□□□□□ -1.18
PTPN4-204	ENST00000431283	ATF2	P15336	505 aa		7.68	□□□□□ -1.18
PTPN4-204	ENST00000431283	FBLN1	P23142	703 aa		7.68	□□□□□ -1.18
PTPN4-204	ENST00000431283	PML	P29590	882 aa		7.68	□□□□□ -1.18
PTPN4-204	ENST00000431283	TNNI3K	Q59H18	835 aa		7.68	□□□□□ -1.18
PTPN4-204	ENST00000431283	FNIP1	Q8TF40	1166 aa		7.68	□□□□□ -1.18
PTPN4-204	ENST00000431283	USP40	Q9NVE5	1235 aa		7.68	□□□□□ -1.18
PTPN4-204	ENST00000431283	LRP2BP	Q9P2M1	347 aa		7.68	□□□□□ -1.18
PTPN4-204	ENST00000431283	FFAR3	O14843	346 aa		7.67	□□□□□ -1.18
PTPN4-204	ENST00000431283	PLS3	P13797	630 aa		7.67	□□□□□ -1.18
PTPN4-204	ENST00000431283	B3GNT8	Q7Z7M8	397 aa		7.67	□□□□□ -1.18
PTPN4-204	ENST00000431283	DCP2	Q8IU60	420 aa	Known RBP	7.67	□□□□□ -1.18
PTPN4-204	ENST00000431283	CXorf38	Q8TB03	319 aa		7.67	□□□□□ -1.18
PTPN4-204	ENST00000431283	AP5M1	Q9H0R1	490 aa		7.67	□□□□□ -1.18
PTPN4-204	ENST00000431283	BCAS3	Q9H6U6	928 aa		7.67	□□□□□ -1.18
PTPN4-204	ENST00000431283	GPRC5C	Q9NQ84	441 aa		7.67	□□□□□ -1.18
PTPN4-204	ENST00000431283	BTG4	Q9NY30	223 aa		7.67	□□□□□ -1.18
PTPN4-204	ENST00000431283	ACTR10	Q9NZ32	417 aa		7.67	□□□□□ -1.18
PTPN4-204	ENST00000431283	UNCX	A6NJT0	531 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	CELA3B	P08861	270 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	ATF4	P18848	351 aa	Predicted RBP	7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	ERCC5	P28715	1186 aa	Predicted RBP	7.66	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms