RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 PURBQ96QR8 312 aaKnown RBP13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 ZKSCAN3Q9BRR0 538 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 KAT14Q9H8E8 782 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 PDGFCQ9NRA1 345 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 DDX49Q9Y6V7 483 aaKnown RBP13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 RAD50Q92878 1312 aa13.54□□□□□ -0.24
SQSTM1-203ENST00000422245 CALML3P27482 149 aa13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 RPS6P62753 249 aaKnown RBP13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 ASPRV1Q53RT3 343 aa13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 KIAA1211Q6ZU35 1233 aa13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 TMEM199Q8N511 208 aa13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 DNERQ8NFT8 737 aa13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 ANKS1AQ92625 1134 aa13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 FAM161BQ96MY7 647 aa13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 ZSCAN10Q96SZ4 725 aaPredicted RBP13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 KRT23Q9C075 422 aa13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 MAF1Q9H063 256 aa13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 CNNM2Q9H8M5 875 aa13.53□□□□□ -0.24
SQSTM1-203ENST00000422245 CUL9Q8IWT3 2517 aa13.52□□□□□ -0.24
SQSTM1-203ENST00000422245 B4DLN1 442 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 B4E1Z4 1266 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 CD4P01730 458 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 GOLGA8HP0CJ92 632 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 EDNRBP24530 442 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 MRPL12P52815 198 aaKnown RBP13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 PDE4DQ08499 809 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 ITGA7Q13683 1181 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 CDC37Q16543 378 aaPredicted RBP13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 PSRC1Q6PGN9 363 aaPredicted RBP13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 ENAHQ8N8S7 591 aaPredicted RBP13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 RGS22Q8NE09 1264 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 UBAC1Q9BSL1 405 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 WDR11Q9BZH6 1224 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 TNKSO95271 1327 aa13.52□□□□□ -0.25
SQSTM1-203ENST00000422245 ABCB11O95342 1321 aa13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 RBM47A0AV96 593 aaKnown RBP13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 NKRFO15226 690 aaKnown RBP eCLIP13.51□□□□□ -0.254e-8■□□□□ 9.4
SQSTM1-203ENST00000422245 PTGS1P23219 599 aa13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 CPT1AP50416 773 aa13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 PPP2R5BQ15173 497 aa13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 USH1GQ495M9 461 aa13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 BRDTQ58F21 947 aaPredicted RBP13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 TTC22Q5TAA0 569 aa13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 SCFD2Q8WU76 684 aa13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 PPP1R12CQ9BZL4 782 aa13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 SEMA6BQ9H3T3 888 aa13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 POLR3EQ9NVU0 708 aa13.51□□□□□ -0.25
SQSTM1-203ENST00000422245 LAMA2P24043 3122 aaKnown RBP13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 PARP1P09874 1014 aaKnown RBP13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 GSPT1P15170 499 aaKnown RBP13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 CSF2RAP15509 400 aa13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 TMEM63BQ5T3F8 832 aa13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 OR6J1Q8NGC5 347 aa13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 CDX2Q99626 313 aaPredicted RBP13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.5□□□□□ -0.251e-6■■■□□ 15.6
SQSTM1-203ENST00000422245 UBA5Q9GZZ9 404 aa13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 MTIF3Q9H2K0 278 aaKnown RBP13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 TTYH1Q9H313 450 aaPredicted RBP13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 CPVLQ9H3G5 476 aa13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 HIPK3Q9H422 1215 aa13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 ZSWIM5Q9P217 1185 aa13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 MYH6P13533 1939 aa13.5□□□□□ -0.25
SQSTM1-203ENST00000422245 GRIN2DO15399 1336 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 DHX16O60231 1041 aaKnown RBP13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 DNAJB2P25686 324 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 PDE4AP27815 886 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 CYP2C18P33260 490 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 PSMC6P62333 389 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 TMEM240Q5SV17 173 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 IFIT1BQ5T764 474 aaKnown RBP13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 RASIP1Q5U651 963 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 MCF2L2Q86YR7 1114 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 ADGRF4Q8IZF3 695 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 RUFY2Q8WXA3 655 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 NOC4LQ9BVI4 516 aaKnown RBP13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 IL25Q9H293 177 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 ALDH8A1Q9H2A2 487 aaPredicted RBP13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 IL23AQ9NPF7 189 aa13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 SUPT16HQ9Y5B9 1047 aaKnown RBP13.49□□□□□ -0.25
SQSTM1-203ENST00000422245 DLL1O00548 723 aa13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 B4GALT4O60513 344 aa13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 KPNA6O60684 536 aa13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 PURAQ00577 322 aaKnown RBP13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 TRDNQ13061 729 aa13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 TTLL4Q14679 1199 aa13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 QRICH1Q2TAL8 776 aa13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 C16orf59Q7L2K0 433 aa13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 NSUN6Q8TEA1 469 aaKnown RBP13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 MTG1Q9BT17 334 aaPredicted RBP13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 TRPV6Q9H1D0 765 aa13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 GPHNQ9NQX3 736 aaPredicted RBP13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 MRPL11Q9Y3B7 192 aaKnown RBP13.48□□□□□ -0.25
SQSTM1-203ENST00000422245 SCN10AQ9Y5Y9 1956 aa13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 A6NJR5 290 aa13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 MYL3P08590 195 aa13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 SUPT20HL2P0C7V6 817 aa13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 ACRP10323 421 aa13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 FOSL2P15408 326 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms