RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CALML3P27482 149 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 NOVP48745 357 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 ALDH5A1P51649 535 aaPredicted RBP9.58□□□□□ -0.88
VIM-202ENST00000421459 TTLL4Q14679 1199 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 ANKRD45Q5TZF3 282 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 DEFB128Q7Z7B8 93 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 MICALL1Q8N3F8 863 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 CLEC4DQ8WXI8 215 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 SYMPKQ92797 1274 aaKnown RBP9.58□□□□□ -0.88
VIM-202ENST00000421459 TMEM47Q9BQJ4 181 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 WDR11Q9BZH6 1224 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 ALDH8A1Q9H2A2 487 aaPredicted RBP9.58□□□□□ -0.88
VIM-202ENST00000421459 RANBP17Q9H2T7 1088 aaKnown RBP9.58□□□□□ -0.88
VIM-202ENST00000421459 CPVLQ9H3G5 476 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 SLC28A3Q9HAS3 691 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 MYH4Q9Y623 1939 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 A0A0D9SFI3 127 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 TNFRSF10AO00220 468 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 ZEB2O60315 1214 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 ARHGEF15O94989 841 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 FGAP02671 866 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 HAND2P61296 217 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 PURAQ00577 322 aaKnown RBP9.57□□□□□ -0.88
VIM-202ENST00000421459 LRRFIP1Q32MZ4 808 aaKnown RBP9.57□□□□□ -0.88
VIM-202ENST00000421459 NBPF20Q3BBV1 942 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 DUSP28Q4G0W2 176 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 SYDE2Q5VT97 1194 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 ZNF589Q86UQ0 364 aaPredicted RBP9.57□□□□□ -0.88
VIM-202ENST00000421459 MORC4Q8TE76 937 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 DCAF4Q8WV16 495 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 TBC1D5Q92609 795 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 NECAB3Q96P71 396 aaPredicted RBP9.57□□□□□ -0.88
VIM-202ENST00000421459 ASB2Q96Q27 587 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 VTA1Q9NP79 307 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 ANAPC4Q9UJX5 808 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 SLC4A7Q9Y6M7 1214 aa9.57□□□□□ -0.88
VIM-202ENST00000421459 MCM3APO60318 1980 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 EPOPA6NHQ4 379 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 ORC4O43929 436 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 ARIH2O95376 493 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 FGRP09769 529 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 GOLGA8HP0CJ92 632 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 CHMP4BP1P59074 171 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 TFF2Q03403 129 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 RAB30Q15771 203 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 FAM47CQ5HY64 1035 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 AKNAD1Q5T1N1 836 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 PPP2R2DQ66LE6 453 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 KRT40Q6A162 431 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 BTNL9Q6UXG8 535 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 SPRED2Q7Z698 418 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 OR6J1Q8NGC5 347 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 ZKSCAN3Q9BRR0 538 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 UBA5Q9GZZ9 404 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 THEGQ9P2T0 379 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 Q9Y3F1 56 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 TNKSO95271 1327 aa9.56□□□□□ -0.88
VIM-202ENST00000421459 RBM47A0AV96 593 aaKnown RBP9.55□□□□□ -0.88
VIM-202ENST00000421459 PDHBP11177 359 aa9.55□□□□□ -0.88
VIM-202ENST00000421459 TOP1P11387 765 aaKnown RBP9.55□□□□□ -0.88
VIM-202ENST00000421459 ATP2A2P16615 1042 aaKnown RBP9.55□□□□□ -0.88
VIM-202ENST00000421459 COL9A1P20849 921 aa9.55□□□□□ -0.88
VIM-202ENST00000421459 RPS6P62753 249 aaKnown RBP9.55□□□□□ -0.88
VIM-202ENST00000421459 NMIQ13287 307 aaPredicted RBP9.55□□□□□ -0.88
VIM-202ENST00000421459 ALX1Q15699 326 aa9.55□□□□□ -0.88
VIM-202ENST00000421459 USH1GQ495M9 461 aa9.55□□□□□ -0.88
VIM-202ENST00000421459 RNF207Q6ZRF8 634 aa9.55□□□□□ -0.88
VIM-202ENST00000421459 TMCO2Q7Z6W1 182 aaPredicted RBP9.55□□□□□ -0.88
VIM-202ENST00000421459 TBC1D10CQ8IV04 446 aa9.55□□□□□ -0.88
VIM-202ENST00000421459 ADAMTS19Q8TE59 1207 aa9.55□□□□□ -0.88
VIM-202ENST00000421459 ATXN2LQ8WWM7 1075 aaKnown RBP9.55□□□□□ -0.88
VIM-202ENST00000421459 CRBNQ96SW2 442 aa9.55□□□□□ -0.88
VIM-202ENST00000421459 LRRC37A2A6NM11 1700 aa9.55□□□□□ -0.88
VIM-202ENST00000421459 CA3P07451 260 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 TXNP10599 105 aaKnown RBP9.54□□□□□ -0.88
VIM-202ENST00000421459 HSPD1P10809 573 aaKnown RBP9.54□□□□□ -0.88
VIM-202ENST00000421459 KCNQ1P51787 676 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 PDE1AP54750 535 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 MRPS5P82675 430 aaKnown RBP9.54□□□□□ -0.88
VIM-202ENST00000421459 PDE4DQ08499 809 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 ZNF543Q08ER8 600 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 LY6KQ17RY6 165 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 MCMDC2Q4G0Z9 681 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 PPP4R3BQ5MIZ7 849 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 RPUSD2Q8IZ73 545 aaKnown RBP9.54□□□□□ -0.88
VIM-202ENST00000421459 EVI5LQ96CN4 794 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 UHRF1Q96T88 793 aaPredicted RBP9.54□□□□□ -0.88
VIM-202ENST00000421459 MTG1Q9BT17 334 aaPredicted RBP9.54□□□□□ -0.88
VIM-202ENST00000421459 MTIF3Q9H2K0 278 aaKnown RBP9.54□□□□□ -0.88
VIM-202ENST00000421459 GPHNQ9NQX3 736 aaPredicted RBP9.54□□□□□ -0.88
VIM-202ENST00000421459 HELLSQ9NRZ9 838 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 TCP11L1Q9NUJ3 509 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 POLR3EQ9NVU0 708 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 ADD3Q9UEY8 706 aaKnown RBP9.54□□□□□ -0.88
VIM-202ENST00000421459 PCDHA11Q9Y5I1 949 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 NEDD4P46934 1319 aa9.54□□□□□ -0.88
VIM-202ENST00000421459 LCTP09848 1927 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 IQCF3P0C7M6 154 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 EDNRBP24530 442 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 CPT1AP50416 773 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms