RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 TFIP11Q9UBB9 837 aaKnown RBP6.8□□□□□ -1.32
HMGB3-202ENST00000419110 HCSTQ9UBK5 93 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 RCOR1Q9UKL0 485 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 PRR12Q9ULL5 1215 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 CLIC4Q9Y696 253 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 MORC2Q9Y6X9 1032 aaPredicted RBP6.8□□□□□ -1.32
HMGB3-202ENST00000419110 MYH11P35749 1972 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 MYPNQ86TC9 1320 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 DOCK5Q9H7D0 1870 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 SPDYE3A6NKU9 549 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 C19orf81C9J6K1 198 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 NEMFO60524 1076 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 CUTAO60888 179 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 FLOT1O75955 427 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 FDX1P10109 184 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 PTPRAP18433 802 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 ATP2B1P20020 1258 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 TXLNAP40222 546 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 MRPL12P52815 198 aaKnown RBP6.79□□□□□ -1.32
HMGB3-202ENST00000419110 BACE1P56817 501 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 FAM160A1Q05DH4 1040 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 PRKG1Q13976 671 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 SLC39A14Q15043 492 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 ZSCAN23Q3MJ62 389 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 NEK8Q86SG6 692 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 LDHDQ86WU2 507 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 SIAH1Q8IUQ4 282 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 ANKRD13AQ8IZ07 590 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 RASGRP4Q8TDF6 673 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 ZKSCAN4Q969J2 545 aaPredicted RBP6.79□□□□□ -1.32
HMGB3-202ENST00000419110 FERMT2Q96AC1 680 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 COA7Q96BR5 231 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 CCDC34Q96HJ3 373 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 GLIS2Q9BZE0 524 aaPredicted RBP6.79□□□□□ -1.32
HMGB3-202ENST00000419110 RPAP3Q9H6T3 665 aaPredicted RBP6.79□□□□□ -1.32
HMGB3-202ENST00000419110 FAM13BQ9NYF5 915 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 CCPG1Q9ULG6 757 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 PCDHA1Q9Y5I3 950 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 SNCAIPQ9Y6H5 919 aa6.79□□□□□ -1.32
HMGB3-202ENST00000419110 MCM3APO60318 1980 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 ZNFX1Q9P2E3 1918 aaKnown RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 SPDYE5A6NIY4 337 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 LAD1O00515 517 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 PPP1R11O60927 126 aaPredicted RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 LETM1O95202 739 aaPredicted RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 GCFC2P16383 781 aaKnown RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 MARCKSP29966 332 aaPredicted RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 HMGCS2P54868 508 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 MAP3K9P80192 1104 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 ATP2C1P98194 919 aaPredicted RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 SPP2Q13103 211 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 PPIL2Q13356 520 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 PTPAQ15257 358 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 MAP3K11Q16584 847 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 UBE2SQ16763 222 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 INF2Q27J81 1249 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 PRAMEF18Q5VWM3 479 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 JAKMIP3Q5VZ66 844 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 ADALQ6DHV7 355 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 CCDC174Q6PII3 467 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 ERO1BQ86YB8 467 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 CCAR1Q8IX12 1150 aaKnown RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 ZNF454Q8N9F8 522 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 KCNK17Q96T54 332 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 PYM1Q9BRP8 204 aaKnown RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 ANO3Q9BYT9 981 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 TNMDQ9H2S6 317 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 CLSTN2Q9H4D0 955 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 PSTPIP2Q9H939 334 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 TMEM63CQ9P1W3 806 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 PPP1R9AQ9ULJ8 1098 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 PCDHA6Q9UN73 950 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 MRPL11Q9Y3B7 192 aaKnown RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 PCDHB6Q9Y5E3 794 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 PCDHA8Q9Y5H6 950 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 ZHX2Q9Y6X8 837 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 MGAMO43451 1857 aa6.78□□□□□ -1.32
HMGB3-202ENST00000419110 MYH9P35579 1960 aaKnown RBP6.78□□□□□ -1.32
HMGB3-202ENST00000419110 M0R2N6 131 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 CTAGE5O15320 804 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 ZBED4O75132 1171 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 FOSP01100 380 aaPredicted RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 ICAM1P05362 532 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 OR52Z1P0C646 297 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 VEGFAP15692 232 aaPredicted RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 PFKFB1P16118 471 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 LIG1P18858 919 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 MCM7P33993 719 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 TOB1P50616 345 aaPredicted RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 ZNF445P59923 1031 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 FKBP1BP68106 108 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 IRX3P78415 501 aaPredicted RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 PPATQ06203 517 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 PABPC4Q13310 644 aaKnown RBP eCLIP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 ZRSR1Q15695 479 aaKnown RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 TMEM266Q2M3C6 531 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 LETM2Q2VYF4 491 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 EARS2Q5JPH6 523 aaKnown RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 KIAA1755Q5JYT7 1200 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms