RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 CCDC136Q96JN2 1154 aa15.28■□□□□ 0.04
LINC00339-202ENST00000416769 CCPG1Q9ULG6 757 aa15.28■□□□□ 0.04
LINC00339-202ENST00000416769 SYNPO2Q9UMS6 1093 aa15.28■□□□□ 0.04
LINC00339-202ENST00000416769 EPOPA6NHQ4 379 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 ASB14A6NK59 587 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 PDE4BQ07343 736 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 BAATQ14032 418 aaPredicted RBP15.27■□□□□ 0.04
LINC00339-202ENST00000416769 CCDC96Q2M329 555 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 KRT40Q6A162 431 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 RCSD1Q6JBY9 416 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 KIAA1211Q6ZU35 1233 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 SPRED2Q7Z698 418 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 FAM160B2Q86V87 743 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 MICALL1Q8N3F8 863 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 ADAMTS19Q8TE59 1207 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 SYMPKQ92797 1274 aaKnown RBP15.27■□□□□ 0.04
LINC00339-202ENST00000416769 AP5M1Q9H0R1 490 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 CERS4Q9HA82 394 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 THEGQ9P2T0 379 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 GTF3C3Q9Y5Q9 886 aa15.27■□□□□ 0.04
LINC00339-202ENST00000416769 TSPY2A6NKD2 308 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 COL9A1P20849 921 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 TFF2Q03403 129 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 AKNAD1Q5T1N1 836 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 DEFB128Q7Z7B8 93 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 SMC5Q8IY18 1101 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 CHURC1Q8WUH1 139 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 COPS5Q92905 334 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 ASB2Q96Q27 587 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 NACAP1Q9BZK3 213 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 ALDH8A1Q9H2A2 487 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-202ENST00000416769 RNF39Q9H2S5 420 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 ZNF287Q9HBT7 754 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 GPCPD1Q9NPB8 672 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 MSRAQ9UJ68 235 aa15.26■□□□□ 0.03
LINC00339-202ENST00000416769 SCN10AQ9Y5Y9 1956 aa15.25■□□□□ 0.03
LINC00339-202ENST00000416769 SALL3Q9BXA9 1300 aa15.25■□□□□ 0.03
LINC00339-202ENST00000416769 ZBBXA8MT70 800 aa15.25■□□□□ 0.03
LINC00339-202ENST00000416769 RANBP6O60518 1105 aaKnown RBP15.25■□□□□ 0.03
LINC00339-202ENST00000416769 ALDH5A1P51649 535 aaPredicted RBP15.25■□□□□ 0.03
LINC00339-202ENST00000416769 RAB30Q15771 203 aa15.25■□□□□ 0.03
LINC00339-202ENST00000416769 TKFCQ3LXA3 575 aa15.25■□□□□ 0.03
LINC00339-202ENST00000416769 MORC4Q8TE76 937 aa15.25■□□□□ 0.03
LINC00339-202ENST00000416769 RANBP17Q9H2T7 1088 aaKnown RBP15.25■□□□□ 0.03
LINC00339-202ENST00000416769 TTC41PQ6P2S7 1318 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 PTPRSQ13332 1948 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 PLA2G6O60733 806 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 ICAM1P05362 532 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 MYL3P08590 195 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 PPP2R2DQ66LE6 453 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 IQSEC1Q6DN90 963 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 CLEC4DQ8WXI8 215 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 CPVLQ9H3G5 476 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 SLC28A3Q9HAS3 691 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 BRWD1Q9NSI6 2320 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 BDP1A6H8Y1 2624 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 XIRP2A4UGR9 3374 aa15.24■□□□□ 0.03
LINC00339-202ENST00000416769 TNKSO95271 1327 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 A0A0D9SFI3 127 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 PTPDC1A2A3K4 754 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 CABYRO75952 493 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 SLC3A2P08195 630 aaKnown RBP15.23■□□□□ 0.03
LINC00339-202ENST00000416769 FDX1P10109 184 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 MX1P20591 662 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 CALML3P27482 149 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 NOVP48745 357 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 KCNQ1P51787 676 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 PURAQ00577 322 aaKnown RBP15.23■□□□□ 0.03
LINC00339-202ENST00000416769 DUSP28Q4G0W2 176 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 RRP12Q5JTH9 1297 aaKnown RBP15.23■□□□□ 0.03
LINC00339-202ENST00000416769 SYDE2Q5VT97 1194 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 B4GALNT3Q6L9W6 998 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 CENPQQ7L2Z9 268 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-202ENST00000416769 ATXN2LQ8WWM7 1075 aaKnown RBP15.23■□□□□ 0.03
LINC00339-202ENST00000416769 FAM227BQ96M60 508 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 TMEM47Q9BQJ4 181 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 WDR11Q9BZH6 1224 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 VTA1Q9NP79 307 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 SLC4A7Q9Y6M7 1214 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 TRIP12Q14669 1992 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-202ENST00000416769 TANC1Q9C0D5 1861 aa15.23■□□□□ 0.03
LINC00339-202ENST00000416769 ARIH2O95376 493 aa15.22■□□□□ 0.03
LINC00339-202ENST00000416769 CA3P07451 260 aa15.22■□□□□ 0.03
LINC00339-202ENST00000416769 ATP2A2P16615 1042 aaKnown RBP15.22■□□□□ 0.03
LINC00339-202ENST00000416769 HAND2P61296 217 aa15.22■□□□□ 0.03
LINC00339-202ENST00000416769 TMCO2Q7Z6W1 182 aaPredicted RBP15.22■□□□□ 0.03
LINC00339-202ENST00000416769 UHRF1Q96T88 793 aaPredicted RBP15.22■□□□□ 0.03
LINC00339-202ENST00000416769 ZEB2O60315 1214 aa15.21■□□□□ 0.03
LINC00339-202ENST00000416769 MRPS5P82675 430 aaKnown RBP15.21■□□□□ 0.03
LINC00339-202ENST00000416769 NBPF20Q3BBV1 942 aa15.21■□□□□ 0.03
LINC00339-202ENST00000416769 FAM47CQ5HY64 1035 aa15.21■□□□□ 0.03
LINC00339-202ENST00000416769 ZNF589Q86UQ0 364 aaPredicted RBP15.21■□□□□ 0.03
LINC00339-202ENST00000416769 OR6J1Q8NGC5 347 aa15.21■□□□□ 0.03
LINC00339-202ENST00000416769 DCAF4Q8WV16 495 aa15.21■□□□□ 0.03
LINC00339-202ENST00000416769 TOMM22Q9NS69 142 aa15.21■□□□□ 0.03
LINC00339-202ENST00000416769 ANAPC4Q9UJX5 808 aa15.21■□□□□ 0.03
LINC00339-202ENST00000416769 Q9Y3F1 56 aa15.21■□□□□ 0.03
LINC00339-202ENST00000416769 ERC2O15083 957 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 ORC4O43929 436 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 FGRP09769 529 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms