RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TAOK2Q9UL54 1235 aa16.8■□□□□ 0.28
USP4-203ENST00000415188 ADGRA2Q96PE1 1338 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 CDK5RAP2Q96SN8 1893 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 SMIM22K7EJ46 135 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 TTC38Q5R3I4 469 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 SPATA20Q8TB22 786 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 ENOX1Q8TC92 643 aaKnown RBP16.79■□□□□ 0.28
USP4-203ENST00000415188 ARMC5Q96C12 935 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 SHISA4Q96DD7 197 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 CSRNP2Q9H175 543 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.79■□□□□ 0.28
USP4-203ENST00000415188 ZNF287Q9HBT7 754 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 MCM9Q9NXL9 1143 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 AFG3L2Q9Y4W6 797 aa16.79■□□□□ 0.28
USP4-203ENST00000415188 DDX60LQ5H9U9 1706 aaKnown RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 A0A0G2JLL6 359 aaPredicted RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 RIOK3O14730 519 aaKnown RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 CTIFO43310 598 aaKnown RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 CTNND1O60716 968 aaKnown RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 ERCC5P28715 1186 aaPredicted RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 CTGFP29279 349 aa16.78■□□□□ 0.28
USP4-203ENST00000415188 USP5P45974 858 aa16.78■□□□□ 0.28
USP4-203ENST00000415188 UBASH3AP57075 661 aa16.78■□□□□ 0.28
USP4-203ENST00000415188 ARHGEF6Q15052 776 aa16.78■□□□□ 0.28
USP4-203ENST00000415188 NPY5RQ15761 445 aa16.78■□□□□ 0.28
USP4-203ENST00000415188 NYAP1Q6ZVC0 841 aa16.78■□□□□ 0.28
USP4-203ENST00000415188 PRRT2Q7Z6L0 340 aaPredicted RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 FOXP4Q8IVH2 680 aaPredicted RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 CCAR2Q8N163 923 aaKnown RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 SRBD1Q8N5C6 995 aaKnown RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 C16orf45Q96MC5 204 aaPredicted RBP16.78■□□□□ 0.28
USP4-203ENST00000415188 KAT14Q9H8E8 782 aa16.78■□□□□ 0.28
USP4-203ENST00000415188 PDE4DIPQ5VU43 2346 aa16.78■□□□□ 0.28
USP4-203ENST00000415188 TBC1D12O60347 775 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 SERPINC1P01008 464 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 SLFN14P0C7P3 912 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 CYP2C8P10632 490 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 CYP2D6P10635 497 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 PLCG2P16885 1265 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 ATP2C1P98194 919 aaPredicted RBP16.77■□□□□ 0.28
USP4-203ENST00000415188 GRIN1Q05586 938 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 RRP1BQ14684 758 aaKnown RBP16.77■□□□□ 0.28
USP4-203ENST00000415188 KIF22Q14807 665 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 GRM4Q14833 912 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 ARID5BQ14865 1188 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 GALNT17Q6IS24 598 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 RCSD1Q6JBY9 416 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 GADL1Q6ZQY3 521 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 LZTS2Q9BRK4 669 aa16.77■□□□□ 0.28
USP4-203ENST00000415188 COL2A1P02458 1487 aaPredicted RBP16.77■□□□□ 0.27
USP4-203ENST00000415188 DOCK1Q14185 1865 aa16.76■□□□□ 0.27
USP4-203ENST00000415188 PLCD1P51178 756 aa16.76■□□□□ 0.27
USP4-203ENST00000415188 PTPN14Q15678 1187 aa16.76■□□□□ 0.27
USP4-203ENST00000415188 CEP135Q66GS9 1140 aa16.76■□□□□ 0.27
USP4-203ENST00000415188 SH3RF1Q7Z6J0 888 aa16.76■□□□□ 0.27
USP4-203ENST00000415188 VSTM4Q8IW00 320 aa16.76■□□□□ 0.27
USP4-203ENST00000415188 PARK7Q99497 189 aaKnown RBP16.76■□□□□ 0.27
USP4-203ENST00000415188 BRCA2P51587 3418 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 NLRP5P59047 1200 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 TFAP4Q01664 338 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 SLC9C1Q4G0N8 1177 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 FAM47AQ5JRC9 791 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 SPECC1Q5M775 1068 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 ARL6IP4Q66PJ3 421 aaKnown RBP16.75■□□□□ 0.27
USP4-203ENST00000415188 ISM2Q6H9L7 571 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 ARMCX5Q6P1M9 558 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 FASTKD5Q7L8L6 764 aaKnown RBP16.75■□□□□ 0.27
USP4-203ENST00000415188 MAPKAPK5Q8IW41 473 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 TGFBRAP1Q8WUH2 860 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 ZNF333Q96JL9 665 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 FOCADQ5VW36 1801 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 PHIPQ8WWQ0 1821 aa16.75■□□□□ 0.27
USP4-203ENST00000415188 MYCP01106 439 aaPredicted RBP16.74■□□□□ 0.27
USP4-203ENST00000415188 PRR29P0C7W0 189 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 ATP1A3P13637 1013 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 ZNF18P17022 549 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 ATP2B1P20020 1258 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 BMP6P22004 513 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 PSMC4P43686 418 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 RBM10P98175 930 aaKnown RBP16.74■□□□□ 0.27
USP4-203ENST00000415188 FCHSD1Q86WN1 690 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 DAGLBQ8NCG7 672 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 CCDC148Q8NFR7 591 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 SH3TC2Q8TF17 1288 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 TRIM47Q96LD4 638 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 GSDMAQ96QA5 445 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 KIAA0100Q14667 2235 aaKnown RBP16.74■□□□□ 0.27
USP4-203ENST00000415188 FLT1P17948 1338 aa16.74■□□□□ 0.27
USP4-203ENST00000415188 FAM205CA6NFA0 338 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 BCRP11274 1271 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 PNMA1Q8ND90 353 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 MKNK2Q9HBH9 465 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 FANCLQ9NW38 375 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 NMT2O60551 498 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 TOP1P11387 765 aaKnown RBP16.73■□□□□ 0.27
USP4-203ENST00000415188 EN2P19622 333 aaPredicted RBP16.73■□□□□ 0.27
USP4-203ENST00000415188 OSBPP22059 807 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 CAP2P40123 477 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 GLIPR1L2Q4G1C9 344 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 EARS2Q5JPH6 523 aaKnown RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms