RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 PTPREP23469 700 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 HOXA7P31268 230 aaPredicted RBP7.57□□□□□ -1.2
VPS41-204ENST00000413141 FXR2P51116 673 aaKnown RBP eCLIP7.57□□□□□ -1.2
VPS41-204ENST00000413141 OAZ1P54368 228 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 GHRHRQ02643 423 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 GRIN1Q05586 938 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 PTGDRQ13258 359 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 MOGSQ13724 837 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 COG2Q14746 738 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 LETM2Q2VYF4 491 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 CCDC183Q5T5S1 534 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 RESP18Q5W5W9 173 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 SHC4Q6S5L8 630 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 GADL1Q6ZQY3 521 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 CCDC73Q6ZRK6 1079 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 CCAR1Q8IX12 1150 aaKnown RBP7.57□□□□□ -1.2
VPS41-204ENST00000413141 CPXCR1Q8N123 301 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 FSIP1Q8NA03 581 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 CRYGNQ8WXF5 182 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 FERMT2Q96AC1 680 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 GZF1Q9H116 711 aaPredicted RBP7.57□□□□□ -1.2
VPS41-204ENST00000413141 RAVER2Q9HCJ3 691 aaKnown RBP7.57□□□□□ -1.2
VPS41-204ENST00000413141 PNMA2Q9UL42 364 aa7.57□□□□□ -1.2
VPS41-204ENST00000413141 ZNF214Q9UL59 606 aaPredicted RBP7.57□□□□□ -1.2
VPS41-204ENST00000413141 CTDP1Q9Y5B0 961 aaPredicted RBP7.57□□□□□ -1.2
VPS41-204ENST00000413141 SRPRBQ9Y5M8 271 aaKnown RBP7.57□□□□□ -1.2
VPS41-204ENST00000413141 MYH7BA7E2Y1 1941 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 PASKQ96RG2 1323 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 FAM237AA0A1B0GTK4 181 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 SPDYE3A6NKU9 549 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 GCOM1H8Y6P7 765 aaPredicted RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 LAD1O00515 517 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 NFIBO00712 420 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 ATP2A1O14983 1001 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 SLC37A4O43826 429 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 EDIL3O43854 480 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 NEMFO60524 1076 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 CCNT1O60563 726 aaKnown RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 NR1I2O75469 434 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 TDP2O95551 362 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 CFBP00751 764 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 FOSP01100 380 aaPredicted RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 POLR2MP0CAP2 368 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 ALAS1P13196 640 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 PFKFB1P16118 471 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 GCFC2P16383 781 aaKnown RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 CMA1P23946 247 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 HOXA13P31271 388 aaPredicted RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 SREBF1P36956 1147 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 HSD17B4P51659 736 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 NDUFA8P51970 172 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 FAM160A1Q05DH4 1040 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 SNAPC2Q13487 334 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 SNW1Q13573 536 aaKnown RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 TMEM132BQ14DG7 1078 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 ZSCAN23Q3MJ62 389 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 MUM1L1Q5H9M0 696 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 CST9Q5W186 159 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 ARL6IP4Q66PJ3 421 aaKnown RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 SNRNP48Q6IEG0 339 aaKnown RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 LBX2Q6XYB7 198 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 FASTKD5Q7L8L6 764 aaKnown RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 FMR1NBQ8N0W7 255 aaPredicted RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 C4orf32Q8N8J7 132 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 C2orf69Q8N8R5 385 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 ZNF579Q8NAF0 562 aaKnown RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 ENGASEQ8NFI3 743 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 CLEC4DQ8WXI8 215 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 SLC10A4Q96EP9 437 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 CLIC6Q96NY7 704 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 TEX13BQ9BXU2 312 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 CSRNP2Q9H175 543 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 TMEM60Q9H2L4 133 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 DDX19AQ9NUU7 478 aaKnown RBP7.56□□□□□ -1.2
VPS41-204ENST00000413141 DACT1Q9NYF0 836 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 HPSEQ9Y251 543 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 SMCHD1A6NHR9 2005 aa7.56□□□□□ -1.2
VPS41-204ENST00000413141 FRMPD4Q14CM0 1322 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 A0A1B0GVL5 298 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 VWA3AA6NCI4 1184 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 OR52Z1P0C646 297 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 ZBTB48P10074 688 aaPredicted RBP7.55□□□□□ -1.2
VPS41-204ENST00000413141 PRPHP41219 470 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 GTF2A2P52657 109 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 IRX3P78415 501 aaPredicted RBP7.55□□□□□ -1.2
VPS41-204ENST00000413141 ARHGAP4P98171 946 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 PABPC4Q13310 644 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS41-204ENST00000413141 IL17AQ16552 155 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 PPP4R3AQ6IN85 833 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 GPAT2Q6NUI2 795 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 POTEEQ6S8J3 1075 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 MOXD1Q6UVY6 613 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 SLC30A10Q6XR72 485 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 MCF2L2Q86YR7 1114 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 MB21D1Q8N884 522 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 TBC1D5Q92609 795 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 MBOAT7Q96N66 472 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 TRERF1Q96PN7 1200 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 NAP1L4Q99733 375 aaKnown RBP7.55□□□□□ -1.2
VPS41-204ENST00000413141 ASCC2Q9H1I8 757 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms