RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 NOVP48745 357 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 AMPD3Q01432 767 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 SLC10A5Q5PT55 438 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 SUSD4Q5VX71 490 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 DTHD1Q6ZMT9 781 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 FBXO33Q7Z6M2 555 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 SMYD4Q8IYR2 804 aaPredicted RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 CCDC102AQ96A19 550 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 TUBGCP2Q9BSJ2 902 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 BSDC1Q9NW68 430 aaPredicted RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 STK17AQ9UEE5 414 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 BHMG1C9JSJ3 638 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 TACC1O75410 805 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 ADAMTS2O95450 1211 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 GPTP24298 496 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 BCAMP50895 628 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 NLRP5P59047 1200 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 LRRC63Q05C16 580 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 KIF5AQ12840 1032 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 PSMD2Q13200 908 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 SEPT2Q15019 361 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 ASTE1Q2TB18 679 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 KIAA1328Q86T90 577 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 RPAINQ86UA6 219 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 FAM76AQ8TAV0 307 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 SECISBP2LQ93073 1101 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 POM121Q96HA1 1249 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 TACO1Q9BSH4 297 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 CRACR2AQ9BSW2 395 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 SPZ1Q9BXG8 430 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 TRIM34Q9BYJ4 488 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 SUGCTQ9HAC7 445 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 GUCA1BQ9UMX6 200 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 SIK3Q9Y2K2 1263 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 LRRC37AA6NMS7 1700 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 GYS2P54840 703 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 EHHADHQ08426 723 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 TTC31Q49AM3 519 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 ICE2Q659A1 982 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 INTS5Q6P9B9 1019 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 PIK3AP1Q6ZUJ8 805 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 DDX17Q92841 729 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 CCDC85AQ96PX6 553 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 CEP89Q96ST8 783 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 CRNKL1Q9BZJ0 848 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 TRIM9Q9C026 710 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 ZMYND12Q9H0C1 365 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 ZSWIM4Q9H7M6 989 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 BARHL2Q9NY43 387 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 RSPH14Q9UHP6 348 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 GDAQ9Y2T3 454 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 HYOU1Q9Y4L1 999 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 TAF1LQ8IZX4 1826 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 GRIN2DO15399 1336 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 GOLGA6BA6NDN3 693 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 EIF3HO15372 352 aaKnown RBP eCLIP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 ANXA13P27216 316 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 CASP1P29466 404 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 CDC25AP30304 524 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 MARSP56192 900 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 SPA17Q15506 151 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 KRT25Q7Z3Z0 450 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 TADA2BQ86TJ2 420 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 CMTR1Q8N1G2 835 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 GUF1Q8N442 669 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 ZNF384Q8TF68 577 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 SMARCC1Q92922 1105 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 NSUN4Q96CB9 384 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 TRIM47Q96LD4 638 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 LRRC27Q9C0I9 530 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 BLZF1Q9H2G9 400 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 DCP1AQ9NPI6 582 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 A1CFQ9NQ94 594 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 GDF3Q9NR23 364 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 CCDC87Q9NVE4 849 aa6.39□□□□□ -1.39
CCDC88A-203ENST00000412148 IRS2Q9Y4H2 1338 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 A0A0U1RQG5 324 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 PALM3A6NDB9 673 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 PDE2AO00408 941 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 PRDM1O75626 825 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 GGCXP38435 758 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 IRAK1P51617 712 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 PMS1P54277 932 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 MAN2A1Q16706 1144 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 CAVIN4Q5BKX8 364 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 FKBP15Q5T1M5 1219 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 ZC3H3Q8IXZ2 948 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 C10orf67Q8IYJ2 551 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 CSGALNACT2Q8N6G5 542 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 SDR42E1Q8WUS8 393 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 ALS2CR12Q96Q35 445 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 LACRTQ9GZZ8 138 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 RIC8AQ9NPQ8 531 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 TOMM22Q9NS69 142 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 PCDHA6Q9UN73 950 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 PCDHA8Q9Y5H6 950 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 PLIN4Q96Q06 1357 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 GOLGA6CA6NDK9 693 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 RCCD1A6NED2 376 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 MINDY4BA8MYZ0 360 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 404 ms