RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TMA7Q9Y2S6 64 aaKnown RBP8.54□□□□□ -1.04
USP40-202ENST00000409945 ABCA3Q99758 1704 aa8.54□□□□□ -1.04
USP40-202ENST00000409945 CLEC3AO75596 197 aa8.54□□□□□ -1.04
USP40-202ENST00000409945 NBPF12Q5TAG4 269 aaPredicted RBP8.54□□□□□ -1.04
USP40-202ENST00000409945 KREMEN1Q96MU8 473 aa8.54□□□□□ -1.04
USP40-202ENST00000409945 CEP131Q9UPN4 1083 aa8.54□□□□□ -1.04
USP40-202ENST00000409945 TTC21BQ7Z4L5 1316 aa8.53□□□□□ -1.04
USP40-202ENST00000409945 ESYT3A0FGR9 886 aa8.53□□□□□ -1.04
USP40-202ENST00000409945 FAM83GA6ND36 823 aa8.53□□□□□ -1.04
USP40-202ENST00000409945 GCP02774 474 aa8.53□□□□□ -1.04
USP40-202ENST00000409945 YOD1Q5VVQ6 348 aaPredicted RBP8.53□□□□□ -1.04
USP40-202ENST00000409945 MFSD2AQ8NA29 543 aa8.53□□□□□ -1.04
USP40-202ENST00000409945 ZNF451Q9Y4E5 1061 aa8.53□□□□□ -1.04
USP40-202ENST00000409945 BCL9LQ86UU0 1499 aa8.53□□□□□ -1.04
USP40-202ENST00000409945 PLCH1Q4KWH8 1693 aa8.53□□□□□ -1.04
USP40-202ENST00000409945 KIAA0232Q92628 1395 aa8.52□□□□□ -1.04
USP40-202ENST00000409945 ADCY3O60266 1144 aa8.52□□□□□ -1.04
USP40-202ENST00000409945 EGFLAMQ63HQ2 1017 aa8.52□□□□□ -1.04
USP40-202ENST00000409945 FAM214BQ7L5A3 538 aa8.52□□□□□ -1.04
USP40-202ENST00000409945 HEXIM2Q96MH2 286 aaKnown RBP8.52□□□□□ -1.04
USP40-202ENST00000409945 USP19O94966 1318 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 FAM87AP0C7U9 286 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 CCNFP41002 786 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 GRIA2P42262 883 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 UVSSAQ2YD98 709 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 FOXB2Q5VYV0 432 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.52□□□□□ -1.052e-6■■■□□ 18.9
USP40-202ENST00000409945 Q96M66 194 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 TESK2Q96S53 571 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 KLHL25Q9H0H3 589 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 C7orf69Q9H7B7 122 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 SLC12A7Q9Y666 1083 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 PHRF1Q9P1Y6 1649 aaKnown RBP8.52□□□□□ -1.05
USP40-202ENST00000409945 AKAP12Q02952 1782 aa8.52□□□□□ -1.05
USP40-202ENST00000409945 CPSF1Q10570 1443 aaKnown RBP8.52□□□□□ -1.05
USP40-202ENST00000409945 EDC4Q6P2E9 1401 aaKnown RBP8.52□□□□□ -1.05
USP40-202ENST00000409945 KDM2BQ8NHM5 1336 aa8.51□□□□□ -1.05
USP40-202ENST00000409945 CPDO75976 1380 aa8.51□□□□□ -1.05
USP40-202ENST00000409945 FAM170BA6NMN3 283 aa8.51□□□□□ -1.05
USP40-202ENST00000409945 TKFCQ3LXA3 575 aa8.51□□□□□ -1.05
USP40-202ENST00000409945 LRP10Q7Z4F1 713 aa8.51□□□□□ -1.05
USP40-202ENST00000409945 ADCY4Q8NFM4 1077 aa8.51□□□□□ -1.05
USP40-202ENST00000409945 MKRN2Q9H000 416 aaKnown RBP8.51□□□□□ -1.05
USP40-202ENST00000409945 SLC12A5Q9H2X9 1139 aa8.51□□□□□ -1.05
USP40-202ENST00000409945 RGS12O14924 1447 aa8.51□□□□□ -1.05
USP40-202ENST00000409945 FAM153BP0C7A2 387 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 SSRP1Q08945 709 aaKnown RBP8.5□□□□□ -1.05
USP40-202ENST00000409945 CHRNA2Q15822 529 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 ZNF765Q7L2R6 523 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 NCAPHQ15003 741 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 EEPD1Q7L9B9 569 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 CCDC144CPQ8IYA2 1237 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 FBXL6Q8N531 539 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 BRF1Q92994 677 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 TP53INP1Q96A56 240 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 COG3Q96JB2 828 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 MFSD14AQ96MC6 490 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 POLR3GLQ9BT43 218 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP40-202ENST00000409945 TPSG1Q9NRR2 321 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 FANCLQ9NW38 375 aa8.5□□□□□ -1.05
USP40-202ENST00000409945 ANKRD36BQ8N2N9 1353 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 MON2Q7Z3U7 1717 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 CRYBG1Q9Y4K1 1723 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 NRKQ7Z2Y5 1582 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 SHISA3A0PJX4 238 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 MAP7Q14244 749 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 TMC3Q7Z5M5 1100 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 ST13P5Q8NFI4 369 aaPredicted RBP8.49□□□□□ -1.05
USP40-202ENST00000409945 DHRS1Q96LJ7 313 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP40-202ENST00000409945 PTCH2Q9Y6C5 1203 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 A0A1W2PP64 1363 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 SSH2Q76I76 1423 aa8.49□□□□□ -1.05
USP40-202ENST00000409945 DHX15O43143 795 aaKnown RBP8.48□□□□□ -1.05
USP40-202ENST00000409945 AUHQ13825 339 aaKnown RBP8.48□□□□□ -1.05
USP40-202ENST00000409945 ARHGEF4Q9NR80 690 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 THRAP3Q9Y2W1 955 aaKnown RBP8.48□□□□□ -1.05
USP40-202ENST00000409945 AATKQ6ZMQ8 1374 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 SLIT3O75094 1523 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 A0A1W2PQU0 124 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 WASH4PA8MWX3 477 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 RASSF7Q02833 373 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 IFRD2Q12894 506 aaPredicted RBP8.48□□□□□ -1.05
USP40-202ENST00000409945 PLA2G4EQ3MJ16 856 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 JMYQ8N9B5 988 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 TBC1D32Q96NH3 1257 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 FAM83CQ9BQN1 747 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 PRDM14Q9GZV8 571 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 TPX2Q9ULW0 747 aaKnown RBP8.48□□□□□ -1.05
USP40-202ENST00000409945 SPATA31A5Q5VU36 1347 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 SPATA31A7Q8IWB4 1347 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 PIK3C2AO00443 1686 aa8.48□□□□□ -1.05
USP40-202ENST00000409945 ITGAVP06756 1048 aa8.47□□□□□ -1.05
USP40-202ENST00000409945 SF1Q15637 639 aaKnown RBP8.47□□□□□ -1.05
USP40-202ENST00000409945 SV2CQ496J9 727 aa8.47□□□□□ -1.05
USP40-202ENST00000409945 C2orf27AQ580R0 203 aa8.47□□□□□ -1.05
USP40-202ENST00000409945 TOM1L2Q6ZVM7 507 aa8.47□□□□□ -1.05
USP40-202ENST00000409945 KRT27Q7Z3Y8 459 aa8.47□□□□□ -1.05
USP40-202ENST00000409945 FAM181AQ8N9Y4 354 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms