RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 DMRT2Q9Y5R5 561 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 IGBP1P78318 339 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 MEFVO15553 781 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-206ENST00000409809 POTEAQ6S8J7 498 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 MRPL50Q8N5N7 158 aaKnown RBP13.98□□□□□ -0.17
COL6A3-206ENST00000409809 TMEM87AQ8NBN3 555 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 ZNF274Q96GC6 653 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-206ENST00000409809 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-206ENST00000409809 CYP2C19P33261 490 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 BEND3Q5T5X7 828 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 C16orf96A6NNT2 1141 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 ECEL1O95672 775 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 S100BP04271 92 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-206ENST00000409809 TRPC5Q9UL62 973 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-206ENST00000409809 DENND4BO75064 1496 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-206ENST00000409809 MSH2P43246 934 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 LAMB3Q13751 1172 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 SLC4A4Q9Y6R1 1079 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 ATP2B3Q16720 1220 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 AOC3Q16853 763 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 GJC2Q5T442 439 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-206ENST00000409809 SYCP2LQ5T4T6 812 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 ZNF711Q9Y462 761 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 MYSM1Q5VVJ2 828 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 DHTKD1Q96HY7 919 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-206ENST00000409809 LARP6Q9BRS8 491 aaKnown RBP13.97□□□□□ -0.17
COL6A3-206ENST00000409809 ACADSP16219 412 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 LDHAL6AQ6ZMR3 332 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 DYDC2Q96IM9 177 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 YY1P25490 414 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 CNGA3Q16281 694 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 CASP10Q92851 521 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 GOLGA8TH3BQL2 631 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 GTPBP6O43824 516 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-206ENST00000409809 EIF2S1P05198 315 aaKnown RBP13.97□□□□□ -0.17
COL6A3-206ENST00000409809 KRT16P08779 473 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 PARP1P09874 1014 aaKnown RBP13.97□□□□□ -0.17
COL6A3-206ENST00000409809 GOLGA8HP0CJ92 632 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 GRIN1Q05586 938 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 TOM1L2Q6ZVM7 507 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 AGGF1Q8N302 714 aaeCLIP13.97□□□□□ -0.17
COL6A3-206ENST00000409809 DTX3LQ8TDB6 740 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 NUDCD1Q96RS6 583 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 MRPS26Q9BYN8 205 aaKnown RBP13.97□□□□□ -0.17
COL6A3-206ENST00000409809 CCDC22O60826 627 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 ZPR1O75312 459 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 CC2D1AQ6P1N0 951 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-206ENST00000409809 TUBGCP3Q96CW5 907 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 PITPNM3Q9BZ71 974 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 POLR3EQ9NVU0 708 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 AP4S1Q9Y587 144 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 H2AFZP0C0S5 128 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 PYGMP11217 842 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 LRMPQ12912 555 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 KLC3Q6P597 504 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 H2AFVQ71UI9 128 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 EPN3Q9H201 632 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 STMN3Q9NZ72 180 aa13.97□□□□□ -0.17
COL6A3-206ENST00000409809 EXOC1LA0A1B0GW35 172 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 SFSWAPQ12872 951 aaKnown RBP13.96□□□□□ -0.17
COL6A3-206ENST00000409809 BZW1Q7L1Q6 419 aaKnown RBP13.96□□□□□ -0.17
COL6A3-206ENST00000409809 WDR75Q8IWA0 830 aaKnown RBP13.96□□□□□ -0.17
COL6A3-206ENST00000409809 SLFN14P0C7P3 912 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 ARHGEF25Q86VW2 580 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 TAB2Q9NYJ8 693 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 FANCAO15360 1455 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 RNASE9P60153 205 aaKnown RBP13.96□□□□□ -0.17
COL6A3-206ENST00000409809 RCSD1Q6JBY9 416 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 NEK8Q86SG6 692 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 TMOD3Q9NYL9 352 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 ZNF229Q9UJW7 825 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 TRAF3IP3Q9Y228 551 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 STAM2O75886 525 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 ZNF839A8K0R7 811 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 TRAPPC10P48553 1259 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 HIC2Q96JB3 615 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 EPB41L5Q9HCM4 733 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 ZFP69BQ9UJL9 534 aa13.96□□□□□ -0.17
COL6A3-206ENST00000409809 TRAPPC8Q9Y2L5 1435 aa13.96□□□□□ -0.18
COL6A3-206ENST00000409809 SLC27A2O14975 620 aa13.96□□□□□ -0.18
COL6A3-206ENST00000409809 NR1I2O75469 434 aa13.96□□□□□ -0.18
COL6A3-206ENST00000409809 PCGF5Q86SE9 256 aa13.96□□□□□ -0.18
COL6A3-206ENST00000409809 ZNF518AQ6AHZ1 1483 aa13.96□□□□□ -0.18
COL6A3-206ENST00000409809 KRT37O76014 449 aa13.96□□□□□ -0.18
COL6A3-206ENST00000409809 DDX42Q86XP3 938 aaKnown RBP eCLIP13.96□□□□□ -0.18
COL6A3-206ENST00000409809 CNBD2Q96M20 576 aa13.96□□□□□ -0.18
COL6A3-206ENST00000409809 DDX28Q9NUL7 540 aaKnown RBP13.96□□□□□ -0.18
COL6A3-206ENST00000409809 STX18Q9P2W9 335 aaKnown RBP13.96□□□□□ -0.18
COL6A3-206ENST00000409809 HNRNPCL2B2RXH8 293 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 GUCY1A3Q02108 690 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 FBXL13Q8NEE6 735 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 CAPN11Q9UMQ6 739 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 GON4LQ3T8J9 2241 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 NT5C2P49902 561 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 STX3Q13277 289 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 CCDC80Q76M96 950 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 ARMCX3Q9UH62 379 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-206ENST00000409809 PPP2R2AP63151 447 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 C1orf146Q5VVC0 180 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 FAM129AQ9BZQ8 928 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms