RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 FXR2P51116 673 aaKnown RBP eCLIP23.32■■□□□ 1.32
USP39-203ENST00000409470 FBXO11Q86XK2 927 aa23.32■■□□□ 1.32
USP39-203ENST00000409470 DDX25Q9UHL0 483 aaKnown RBP23.32■■□□□ 1.32
USP39-203ENST00000409470 ZBTB21Q9ULJ3 1066 aa23.32■■□□□ 1.32
USP39-203ENST00000409470 MIGA2Q7L4E1 593 aa23.32■■□□□ 1.32
USP39-203ENST00000409470 MYOZ2Q9NPC6 264 aa23.32■■□□□ 1.32
USP39-203ENST00000409470 WNT10BO00744 389 aa23.31■■□□□ 1.32
USP39-203ENST00000409470 MARCH6O60337 910 aa23.31■■□□□ 1.32
USP39-203ENST00000409470 GCFC2P16383 781 aaKnown RBP23.31■■□□□ 1.32
USP39-203ENST00000409470 SFPQP23246 707 aaKnown RBP eCLIP23.31■■□□□ 1.32
USP39-203ENST00000409470 CCZ1BP86790 482 aa23.31■■□□□ 1.32
USP39-203ENST00000409470 CCZ1P86791 482 aaPredicted RBP23.31■■□□□ 1.32
USP39-203ENST00000409470 TNIP1Q15025 636 aa23.31■■□□□ 1.32
USP39-203ENST00000409470 TPD52L1Q16890 204 aaPredicted RBP23.31■■□□□ 1.32
USP39-203ENST00000409470 NBPF9Q3BBW0 867 aa23.31■■□□□ 1.32
USP39-203ENST00000409470 USH1GQ495M9 461 aa23.31■■□□□ 1.32
USP39-203ENST00000409470 VSTM4Q8IW00 320 aa23.31■■□□□ 1.32
USP39-203ENST00000409470 CDAN1Q8IWY9 1227 aa23.31■■□□□ 1.32
USP39-203ENST00000409470 NAP1L4Q99733 375 aaKnown RBP23.31■■□□□ 1.32
USP39-203ENST00000409470 GOPCQ9HD26 462 aa23.31■■□□□ 1.32
USP39-203ENST00000409470 TBC1D12O60347 775 aa23.3■■□□□ 1.32
USP39-203ENST00000409470 BTNL9Q6UXG8 535 aa23.3■■□□□ 1.32
USP39-203ENST00000409470 ACER1Q8TDN7 264 aa23.3■■□□□ 1.32
USP39-203ENST00000409470 LRRC15Q8TF66 581 aa23.3■■□□□ 1.32
USP39-203ENST00000409470 MMTAG2Q9BU76 263 aaKnown RBP23.3■■□□□ 1.32
USP39-203ENST00000409470 TMX2Q9Y320 296 aa23.3■■□□□ 1.32
USP39-203ENST00000409470 ARMCX5Q6P1M9 558 aa23.3■■□□□ 1.32
USP39-203ENST00000409470 ZBED3Q96IU2 234 aaPredicted RBP23.3■■□□□ 1.32
USP39-203ENST00000409470 NFKBIEO00221 500 aa23.29■■□□□ 1.32
USP39-203ENST00000409470 PAK1Q13153 545 aa23.29■■□□□ 1.32
USP39-203ENST00000409470 PDIA5Q14554 519 aa23.29■■□□□ 1.32
USP39-203ENST00000409470 KCNB1Q14721 858 aa23.29■■□□□ 1.32
USP39-203ENST00000409470 CDK5RAP3Q96JB5 506 aa23.29■■□□□ 1.32
USP39-203ENST00000409470 ANO3Q9BYT9 981 aa23.29■■□□□ 1.32
USP39-203ENST00000409470 INTS13Q9NVM9 706 aa23.29■■□□□ 1.32
USP39-203ENST00000409470 GDAQ9Y2T3 454 aa23.29■■□□□ 1.32
USP39-203ENST00000409470 FER1L6Q2WGJ9 1857 aa23.29■■□□□ 1.32
USP39-203ENST00000409470 SHTN1A0MZ66 631 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 STAT2P52630 851 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 KMT5BQ4FZB7 885 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 RWDD2AQ9UIY3 292 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 PRR12Q9ULL5 1215 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 BCS1LQ9Y276 419 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 MYH7BA7E2Y1 1941 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 NRDCO43847 1150 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 AMPD3Q01432 767 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 AP3B2Q13367 1082 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 NELFBQ8WX92 580 aa23.28■■□□□ 1.32
USP39-203ENST00000409470 CCDC47Q96A33 483 aaKnown RBP23.28■■□□□ 1.32
USP39-203ENST00000409470 POTEMA6NI47 508 aa23.27■■□□□ 1.32
USP39-203ENST00000409470 MEIS2O14770 477 aa23.27■■□□□ 1.32
USP39-203ENST00000409470 PTPN21Q16825 1174 aa23.27■■□□□ 1.32
USP39-203ENST00000409470 KRT79Q5XKE5 535 aa23.27■■□□□ 1.32
USP39-203ENST00000409470 MAPK8IP1Q9UQF2 711 aa23.27■■□□□ 1.32
USP39-203ENST00000409470 KLRC4O43908 158 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 COBLO75128 1261 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 CAP2P40123 477 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 PRCPP42785 496 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 USP11P51784 963 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 R3HDM1Q15032 1099 aaKnown RBP23.26■■□□□ 1.31
USP39-203ENST00000409470 KIAA1755Q5JYT7 1200 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 FAM83BQ5T0W9 1011 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 CDKAL1Q5VV42 579 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 MCTP2Q6DN12 878 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 SEMA3FQ13275 785 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 GRB10Q13322 594 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 SNX29Q8TEQ0 813 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 HAS1Q92839 578 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 TRIM9Q9C026 710 aa23.26■■□□□ 1.31
USP39-203ENST00000409470 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.26■■□□□ 1.31
USP39-203ENST00000409470 BRCA1P38398 1863 aaKnown RBP23.26■■□□□ 1.31
USP39-203ENST00000409470 RHOBTB3O94955 611 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 STIM1Q13586 685 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 ZYXQ15942 572 aaKnown RBP23.25■■□□□ 1.31
USP39-203ENST00000409470 C7orf25Q9BPX7 421 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 SH2D4AQ9H788 454 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 STK17AQ9UEE5 414 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 SPDYE3A6NKU9 549 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 TERF1P54274 439 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 ASIC1P78348 528 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 SV2BQ7L1I2 683 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 CTAGE1Q96RT6 745 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 PGAP2Q9UHJ9 254 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 PCDHA12Q9UN75 941 aa23.25■■□□□ 1.31
USP39-203ENST00000409470 SCAF8Q9UPN6 1271 aaKnown RBP23.25■■□□□ 1.31
USP39-203ENST00000409470 A0A1B0GTH6 734 aa23.24■■□□□ 1.31
USP39-203ENST00000409470 TAL1P17542 331 aaPredicted RBP23.24■■□□□ 1.31
USP39-203ENST00000409470 RPS12P25398 132 aaKnown RBP23.24■■□□□ 1.31
USP39-203ENST00000409470 RASA3Q14644 834 aa23.24■■□□□ 1.31
USP39-203ENST00000409470 NR1I3Q14994 352 aa23.24■■□□□ 1.31
USP39-203ENST00000409470 ADSSL1Q8N142 457 aa23.24■■□□□ 1.31
USP39-203ENST00000409470 PNMA5Q96PV4 448 aa23.24■■□□□ 1.31
USP39-203ENST00000409470 VCPKMTQ9H867 229 aa23.24■■□□□ 1.31
USP39-203ENST00000409470 EXOC1Q9NV70 894 aa23.24■■□□□ 1.31
USP39-203ENST00000409470 FOSP01100 380 aaPredicted RBP23.23■■□□□ 1.31
USP39-203ENST00000409470 MMP14P50281 582 aa23.23■■□□□ 1.31
USP39-203ENST00000409470 ZNF280AP59817 542 aaPredicted RBP23.23■■□□□ 1.31
USP39-203ENST00000409470 TRAF1Q13077 416 aa23.23■■□□□ 1.31
USP39-203ENST00000409470 FILIP1LQ4L180 1135 aa23.23■■□□□ 1.31
USP39-203ENST00000409470 SPECC1LQ69YQ0 1117 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms