RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 SOWAHBA6NEL2 793 aa23.45■■□□□ 1.34
PTCD3-202ENST00000409326 CCDC85CA6NKD9 419 aa23.45■■□□□ 1.34
PTCD3-202ENST00000409326 MYCP01106 439 aaPredicted RBP23.45■■□□□ 1.34
PTCD3-202ENST00000409326 CCL5P13501 91 aa23.45■■□□□ 1.34
PTCD3-202ENST00000409326 IFNAR1P17181 557 aa23.45■■□□□ 1.34
PTCD3-202ENST00000409326 CALML3P27482 149 aa23.45■■□□□ 1.34
PTCD3-202ENST00000409326 STK3Q13188 491 aa23.45■■□□□ 1.34
PTCD3-202ENST00000409326 RABEP1Q15276 862 aa23.45■■□□□ 1.34
PTCD3-202ENST00000409326 V9GY48 417 aaPredicted RBP23.45■■□□□ 1.34
PTCD3-202ENST00000409326 ASTN1O14525 1302 aa23.44■■□□□ 1.34
PTCD3-202ENST00000409326 PFKFB2O60825 505 aa23.44■■□□□ 1.34
PTCD3-202ENST00000409326 SAMD3Q8N6K7 520 aa23.44■■□□□ 1.34
PTCD3-202ENST00000409326 TBC1D5Q92609 795 aa23.44■■□□□ 1.34
PTCD3-202ENST00000409326 UNC93B1Q9H1C4 597 aa23.44■■□□□ 1.34
PTCD3-202ENST00000409326 SLKQ9H2G2 1235 aaPredicted RBP23.44■■□□□ 1.34
PTCD3-202ENST00000409326 MAP3K20Q9NYL2 800 aaKnown RBP23.44■■□□□ 1.34
PTCD3-202ENST00000409326 RBM27Q9P2N5 1060 aaKnown RBP23.44■■□□□ 1.34
PTCD3-202ENST00000409326 ADD3Q9UEY8 706 aaKnown RBP23.44■■□□□ 1.34
PTCD3-202ENST00000409326 CFBP00751 764 aa23.43■■□□□ 1.34
PTCD3-202ENST00000409326 HSD17B4P51659 736 aa23.43■■□□□ 1.34
PTCD3-202ENST00000409326 SCRN1Q12765 414 aa23.43■■□□□ 1.34
PTCD3-202ENST00000409326 NOL8Q76FK4 1167 aaKnown RBP23.43■■□□□ 1.34
PTCD3-202ENST00000409326 PURBQ96QR8 312 aaKnown RBP23.43■■□□□ 1.34
PTCD3-202ENST00000409326 RNF26Q9BY78 433 aaPredicted RBP23.43■■□□□ 1.34
PTCD3-202ENST00000409326 RNF208Q9H0X6 261 aa23.43■■□□□ 1.34
PTCD3-202ENST00000409326 HMX1Q9NP08 348 aaPredicted RBP23.43■■□□□ 1.34
PTCD3-202ENST00000409326 LOC102724159A0A0B4J2E5 919 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 hCG_1984214I3L0E3 225 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 CPLX1O14810 134 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 PRPF3O43395 683 aaKnown RBP23.42■■□□□ 1.34
PTCD3-202ENST00000409326 CYBAP13498 195 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 PWP2Q15269 919 aaKnown RBP23.42■■□□□ 1.34
PTCD3-202ENST00000409326 ME3Q16798 604 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 WWC2Q6AWC2 1192 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 CPLX2Q6PUV4 134 aaKnown RBP23.42■■□□□ 1.34
PTCD3-202ENST00000409326 HEATR3Q7Z4Q2 680 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 ZNF713Q8N859 430 aaPredicted RBP23.42■■□□□ 1.34
PTCD3-202ENST00000409326 IL27Q8NEV9 243 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 DNERQ8NFT8 737 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 SYTL5Q8TDW5 730 aaPredicted RBP23.42■■□□□ 1.34
PTCD3-202ENST00000409326 GPKOWQ92917 476 aaPredicted RBP eCLIP23.42■■□□□ 1.342e-6■■□□□ 13
PTCD3-202ENST00000409326 PHKBQ93100 1093 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 TMEM106CQ9BVX2 250 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.42■■□□□ 1.34
PTCD3-202ENST00000409326 PAK6Q9NQU5 681 aaPredicted RBP23.42■■□□□ 1.34
PTCD3-202ENST00000409326 NRBP1Q9UHY1 535 aa23.42■■□□□ 1.34
PTCD3-202ENST00000409326 ASB14A6NK59 587 aa23.41■■□□□ 1.34
PTCD3-202ENST00000409326 ALDH5A1P51649 535 aaPredicted RBP23.41■■□□□ 1.34
PTCD3-202ENST00000409326 PFKFB3Q16875 520 aaPredicted RBP23.41■■□□□ 1.34
PTCD3-202ENST00000409326 ARMCX2Q7L311 632 aa23.41■■□□□ 1.34
PTCD3-202ENST00000409326 TRPV1Q8NER1 839 aa23.41■■□□□ 1.34
PTCD3-202ENST00000409326 COL20A1Q9P218 1284 aa23.41■■□□□ 1.34
PTCD3-202ENST00000409326 LARGE1O95461 756 aa23.4■■□□□ 1.34
PTCD3-202ENST00000409326 SNAI1O95863 264 aaPredicted RBP23.4■■□□□ 1.34
PTCD3-202ENST00000409326 CCND3P30281 292 aaPredicted RBP23.4■■□□□ 1.34
PTCD3-202ENST00000409326 AKAP17AQ02040 695 aaKnown RBP23.4■■□□□ 1.34
PTCD3-202ENST00000409326 PPP1R18Q6NYC8 613 aa23.4■■□□□ 1.34
PTCD3-202ENST00000409326 MORC4Q8TE76 937 aa23.4■■□□□ 1.34
PTCD3-202ENST00000409326 SLC26A6Q9BXS9 759 aa23.4■■□□□ 1.34
PTCD3-202ENST00000409326 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.4■■□□□ 1.34
PTCD3-202ENST00000409326 CNPY2Q9Y2B0 182 aa23.4■■□□□ 1.34
PTCD3-202ENST00000409326 KIAA1217Q5T5P2 1943 aa23.39■■□□□ 1.34
PTCD3-202ENST00000409326 GCOM1H8Y6P7 765 aaPredicted RBP23.39■■□□□ 1.33
PTCD3-202ENST00000409326 GJB1P08034 283 aa23.39■■□□□ 1.33
PTCD3-202ENST00000409326 POLR2MP0CAP2 368 aa23.39■■□□□ 1.33
PTCD3-202ENST00000409326 SCG2P13521 617 aa23.39■■□□□ 1.33
PTCD3-202ENST00000409326 PKN1Q16512 942 aa23.39■■□□□ 1.33
PTCD3-202ENST00000409326 PRAMEF19Q5SWL8 479 aa23.39■■□□□ 1.33
PTCD3-202ENST00000409326 TRIM22Q8IYM9 498 aa23.39■■□□□ 1.33
PTCD3-202ENST00000409326 GTF3C6Q969F1 213 aa23.39■■□□□ 1.33
PTCD3-202ENST00000409326 BARHL2Q9NY43 387 aa23.39■■□□□ 1.33
PTCD3-202ENST00000409326 LIMCH1Q9UPQ0 1083 aa23.39■■□□□ 1.33
PTCD3-202ENST00000409326 STXBP3O00186 592 aa23.38■■□□□ 1.33
PTCD3-202ENST00000409326 ST18O60284 1047 aa23.38■■□□□ 1.33
PTCD3-202ENST00000409326 CDKL5O76039 1030 aa23.38■■□□□ 1.33
PTCD3-202ENST00000409326 HOXA13P31271 388 aaPredicted RBP23.38■■□□□ 1.33
PTCD3-202ENST00000409326 NAPAP54920 295 aa23.38■■□□□ 1.33
PTCD3-202ENST00000409326 SSRP1Q08945 709 aaKnown RBP23.38■■□□□ 1.33
PTCD3-202ENST00000409326 TYW1BQ6NUM6 668 aa23.38■■□□□ 1.33
PTCD3-202ENST00000409326 TAAR1Q96RJ0 339 aa23.38■■□□□ 1.33
PTCD3-202ENST00000409326 POTEFA5A3E0 1075 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 PIK3CDO00329 1044 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 PPFIA3O75145 1194 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 ZNF865P0CJ78 1059 aaPredicted RBP23.37■■□□□ 1.33
PTCD3-202ENST00000409326 EDNRBP24530 442 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 SOX10P56693 466 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 NECAB1Q8N987 351 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 NSUN6Q8TEA1 469 aaKnown RBP23.37■■□□□ 1.33
PTCD3-202ENST00000409326 DEFB118Q96PH6 123 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 RMDN3Q96TC7 470 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 MPHOSPH6Q99547 160 aaKnown RBP23.37■■□□□ 1.33
PTCD3-202ENST00000409326 KATNBL1Q9H079 304 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 ABHD16BQ9H3Z7 469 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 PSTPIP2Q9H939 334 aa23.37■■□□□ 1.33
PTCD3-202ENST00000409326 B4DLN1 442 aa23.36■■□□□ 1.33
PTCD3-202ENST00000409326 SEPT4O43236 478 aa23.36■■□□□ 1.33
PTCD3-202ENST00000409326 CNGA1P29973 690 aa23.36■■□□□ 1.33
PTCD3-202ENST00000409326 GJA8P48165 433 aa23.36■■□□□ 1.33
PTCD3-202ENST00000409326 MRPL12P52815 198 aaKnown RBP23.36■■□□□ 1.33
PTCD3-202ENST00000409326 U2AF1L4Q8WU68 220 aaKnown RBP23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms