RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 COL20A1Q9P218 1284 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 SMC3Q9UQE7 1217 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 IVNS1ABPQ9Y6Y0 642 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 HSD17B4P51659 736 aa18.34■□□□□ 0.53
HMGA1-204ENST00000401473 GHRHRQ02643 423 aa18.34■□□□□ 0.53
HMGA1-204ENST00000401473 PRKCZQ05513 592 aa18.34■□□□□ 0.53
HMGA1-204ENST00000401473 KCTD2Q14681 263 aa18.34■□□□□ 0.53
HMGA1-204ENST00000401473 SLC30A10Q6XR72 485 aa18.34■□□□□ 0.53
HMGA1-204ENST00000401473 RNF207Q6ZRF8 634 aa18.34■□□□□ 0.53
HMGA1-204ENST00000401473 ABRAQ8N0Z2 381 aa18.34■□□□□ 0.53
HMGA1-204ENST00000401473 LCTP09848 1927 aa18.34■□□□□ 0.53
HMGA1-204ENST00000401473 FOSBP53539 338 aa18.33■□□□□ 0.53
HMGA1-204ENST00000401473 MCF2L2Q86YR7 1114 aa18.33■□□□□ 0.53
HMGA1-204ENST00000401473 FAM184AQ8NB25 1140 aa18.33■□□□□ 0.53
HMGA1-204ENST00000401473 WASF1Q92558 559 aa18.33■□□□□ 0.53
HMGA1-204ENST00000401473 PHF20Q9BVI0 1012 aa18.33■□□□□ 0.53
HMGA1-204ENST00000401473 CWC22Q9HCG8 908 aaKnown RBP18.33■□□□□ 0.53
HMGA1-204ENST00000401473 RIC8AQ9NPQ8 531 aa18.33■□□□□ 0.53
HMGA1-204ENST00000401473 SRRDQ9UH36 339 aa18.33■□□□□ 0.53
HMGA1-204ENST00000401473 ASTN1O14525 1302 aa18.33■□□□□ 0.52
HMGA1-204ENST00000401473 SLC15A5A6NIM6 579 aa18.33■□□□□ 0.52
HMGA1-204ENST00000401473 CALML3P27482 149 aa18.33■□□□□ 0.52
HMGA1-204ENST00000401473 FLT3LGP49771 235 aa18.33■□□□□ 0.52
HMGA1-204ENST00000401473 COL13A1Q5TAT6 717 aaPredicted RBP18.33■□□□□ 0.52
HMGA1-204ENST00000401473 PPP1R18Q6NYC8 613 aa18.33■□□□□ 0.52
HMGA1-204ENST00000401473 CTU1Q7Z7A3 348 aaKnown RBP18.33■□□□□ 0.52
HMGA1-204ENST00000401473 SYTL5Q8TDW5 730 aaPredicted RBP18.33■□□□□ 0.52
HMGA1-204ENST00000401473 NUDT12Q9BQG2 462 aa18.33■□□□□ 0.52
HMGA1-204ENST00000401473 ESYT2A0FGR8 921 aa18.32■□□□□ 0.52
HMGA1-204ENST00000401473 GNRH1P01148 92 aa18.32■□□□□ 0.52
HMGA1-204ENST00000401473 NLRP5P59047 1200 aa18.32■□□□□ 0.52
HMGA1-204ENST00000401473 GUCY1B3Q02153 619 aa18.32■□□□□ 0.52
HMGA1-204ENST00000401473 UBE2SQ16763 222 aa18.32■□□□□ 0.52
HMGA1-204ENST00000401473 FAM133AQ8N9E0 248 aa18.32■□□□□ 0.52
HMGA1-204ENST00000401473 NPLOC4Q8TAT6 608 aa18.32■□□□□ 0.52
HMGA1-204ENST00000401473 FGD4Q96M96 766 aa18.32■□□□□ 0.52
HMGA1-204ENST00000401473 PLXNA1Q9UIW2 1896 aa18.32■□□□□ 0.52
HMGA1-204ENST00000401473 GCOM1H8Y6P7 765 aaPredicted RBP18.31■□□□□ 0.52
HMGA1-204ENST00000401473 PIK3CDO00329 1044 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 POLR2MP0CAP2 368 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 MAP2K5Q13163 448 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 BECN1Q14457 450 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 ZNF792Q3KQV3 632 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 KRT40Q6A162 431 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 FBXO18Q8NFZ0 1043 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 TAAR1Q96RJ0 339 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 DDX49Q9Y6V7 483 aaKnown RBP18.31■□□□□ 0.52
HMGA1-204ENST00000401473 MCM3APO60318 1980 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 PFASO15067 1338 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 SOWAHBA6NEL2 793 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 CYP2B6P20813 491 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 CLK2P49760 499 aaKnown RBP18.31■□□□□ 0.52
HMGA1-204ENST00000401473 MRPL12P52815 198 aaKnown RBP18.31■□□□□ 0.52
HMGA1-204ENST00000401473 DPP9Q86TI2 863 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 FCHSD1Q86WN1 690 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 CCDC12Q8WUD4 166 aaPredicted RBP18.31■□□□□ 0.52
HMGA1-204ENST00000401473 CUL5Q93034 780 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 C8orf76Q96K31 380 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 C6orf50Q9HD87 102 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 MAP3K20Q9NYL2 800 aaKnown RBP18.31■□□□□ 0.52
HMGA1-204ENST00000401473 BIN2Q9UBW5 565 aaPredicted RBP18.31■□□□□ 0.52
HMGA1-204ENST00000401473 PTPN22Q9Y2R2 807 aa18.31■□□□□ 0.52
HMGA1-204ENST00000401473 DNAH12Q6ZR08 3092 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 POTEB2H3BUK9 544 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 M0R2N6 131 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 HSP90AA1P07900 732 aaKnown RBP18.3■□□□□ 0.52
HMGA1-204ENST00000401473 GNA11P29992 359 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 ADCY7P51828 1080 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 ARHGEF6Q15052 776 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 CCDC148Q8NFR7 591 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 RASGRP4Q8TDF6 673 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 OXER1Q8TDS5 423 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 MAF1Q9H063 256 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 TMEM260Q9NX78 707 aa18.3■□□□□ 0.52
HMGA1-204ENST00000401473 HOXC6P09630 235 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 XBP1P17861 261 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 HOXD10P28358 340 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 CCL14Q16627 93 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 LARP1BQ659C4 914 aaKnown RBP18.29■□□□□ 0.52
HMGA1-204ENST00000401473 SAMD3Q8N6K7 520 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 SOCS4Q8WXH5 440 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 FLRT1Q9NZU1 646 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 PCDHA4Q9UN74 947 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 PTCH2Q9Y6C5 1203 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 MKI67P46013 3256 aaKnown RBP18.29■□□□□ 0.52
HMGA1-204ENST00000401473 MMP1P03956 469 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 ANP32AP39687 249 aaKnown RBP18.29■□□□□ 0.52
HMGA1-204ENST00000401473 PGBD1Q96JS3 809 aa18.29■□□□□ 0.52
HMGA1-204ENST00000401473 RBBP6Q7Z6E9 1792 aaKnown RBP18.28■□□□□ 0.52
HMGA1-204ENST00000401473 ZNF236Q9UL36 1845 aa18.28■□□□□ 0.52
HMGA1-204ENST00000401473 BTBD18B2RXH4 712 aa18.28■□□□□ 0.52
HMGA1-204ENST00000401473 NR5A1Q13285 461 aa18.28■□□□□ 0.52
HMGA1-204ENST00000401473 JAKMIP3Q5VZ66 844 aa18.28■□□□□ 0.52
HMGA1-204ENST00000401473 BLIDQ8IZY5 108 aa18.28■□□□□ 0.52
HMGA1-204ENST00000401473 FAM177A1Q8N128 213 aaPredicted RBP18.28■□□□□ 0.52
HMGA1-204ENST00000401473 MAML3Q96JK9 1138 aa18.28■□□□□ 0.52
HMGA1-204ENST00000401473 RMDN3Q96TC7 470 aa18.28■□□□□ 0.52
HMGA1-204ENST00000401473 PCDHA6Q9UN73 950 aa18.28■□□□□ 0.52
HMGA1-204ENST00000401473 PCDHA8Q9Y5H6 950 aa18.28■□□□□ 0.52
HMGA1-204ENST00000401473 IGHA2P01877 340 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms